Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium335g00003 ATGGGAGAGACCGATCAACTTGTTATTTTGACAAGATTTCAAGATGCAATGAGAATGGTCATGGACATAGTCGAAAAGGGTAGGAAGAACAAAAGGAGCAAGCGAATACTTAGGTCAACCCTAAAAAATATGACTCTAGTGGTGCAGGAGATAAAGCAATACAATGAACACTTGAATCCACCCAGAGAAGAAATCATCACTCTTGTCAAAGAAAATGATCCAGGGGAAGATCTTGTGTGCAATTCATGCTCCCGGAGCTTGTGGTGGACCAAATTTCTATCTTGGTTTTCACTCTACGGGGAGGGACTTTTGCATGAGAAGAATGATTCGCTTACTTCGGATGACAAACAAGTTAAGGATATAAAAAATACACTGTACAAGGTGAGAGAGATTATTGAGCTTCTTGATATAGAGAATTTTGAGCAGAAACTTAAAGGAGATGGAACGCCAATTAAGTGTCCTTATGGTGTTCCTGAAAACCCAGAATTTACTGTTGGCTTCGTTCCGGTGTTGAGCAAGTTGAAGATGGAGGTTCTCCAGGAAGGTGTGTTCACCCTTTTGTTGTCTGGCATGGGTGGATCTGGTAAAACAACCTTGGCTACAATGCTCTGTAAGGATAAAGAAGTCAAGGGTAAATTCAAGAACAATATTTTGTTTGTCAATTTCTCCCAAACGCCTAAGTTGAAGAATATCGTAGAGAGATTATTTGAACATTGTGGCTACCACGTGCCTGAGTTTGTAAGTGATGAAGATGCAATTAAACGGTTGGAAATTTTGATGAGGAAAATTGAGGGAAGTCCACTGTTGTTGGTCTTGGATGATGTTTGGCCAGGCTCGGAAGCCCTTGTTGACAAGTTTAAATTCCAGATGTCTGATTATAAAATTTTGGTGATTTCAAGGGTTGCATTTCCTAAATTTGGCACCCAAATCATCTTGAAATCCCTTGTTCATGAAGATGCAATGACCCTTTTCCGTCATCACGCTCTCTTGGAAGAAAACAGTTCAAAATGCAGTTTAAGTATTCCTAACGAAGAAATTGTCCAAAAGGTTGTGAGATATTGCAAGGGTTTACCGCTTGCCATTAAAGTGATTGGTAGATCACTGAGTCATCAGTCTACTGAGTTGTGGCAAAAGATGGTGGAGGAGTTGTCAAAAGGTCATTGTATACTTGATTCCAACACTGAATTACTTACTTCCCTCCAAAAGATCTTGGATGTATTGGAAGATAATCCCATCATCAAAGAGTGCTTCATGGACCTTGGGTTATTTCCTGAAGATCAAAGAATTCCTCTTCCTGCTCTCATTGACATGTGGGCAGAATTGTACAAATTAGATGATGATGGCATAGAGGCTATGGAAATCATAAAAAAATTGGACTCCATGAATCTGGCTAATCTTTTAGTAGCAAGGAGAAATACAGGTGACTCAGATAATCACTGCTACAATAACCACTTTGTCGTCCTCCATGATCTTCTAAGAGATCTTGCAATTTATCAAAACAACCGGGAACCAATTGAACAGAGAAAGAGAATTATTACTGGCATAAATGAAAATCAAAGTCAATGGTGGCTTGGGGAAAAGCAACAAGGCATGATGTCCCGCTTGTTGTCAAAATATCGCGGATGGTGTGTTAAACAGACTATTCAACAGGTCTCAGCCCTCATATTGTCGCTGTCAACTGATGAAACTTGTGCTTCATATTGGTCCGACATACAACCATCCCAAGCAGAAGTTCTGATTTTAAATCTTCAAACTAAGAAGTACACCTTTCCGGAGTTCATGGAGAAAATGATTAAACTAAAAGTCCTTATCGTGACAAATTATGGTTTTCATCATTCTGAACTGGACAATTTCCAACTACTAGGTTCTGTATCGAACCTGAAAAGAATCAGACTAGAGCGGATTTCTGTTCCTCACTTGAGCGCATTGAAAAATCTGAAAAAGTTATCTCTCTACATGTGTAGTAACATAAGCCAGGTTTTTGAAAATGGCACCATCCTAGTTTCAGATTCATTTCCAAGTTTATTAGATTTAAACATTGACTATTGCAAGGATATGGTGAGATTGCCTAATGGTATCTGTGACATTTCCTCTCTAAAGAAGCTCAGCATTACTAACTGCCACAAACTTTGTTCTCTGCCCCAAGAAATTGGACAGTTGTTGAATTTGGAACTCCTAAACCTAAGTACCTGTACTGACTTGGAAGAGATACCAGATTCTATTCAAAACCTTTCTAAGCTAAGACTTCTTAACATCTCAAACTGCATAAGCCTTTCAAATTTACCAGAGGACATTGGTAATCTATGTAATCTCAGAAATCTCAATATGACAAGCTGTGCTAGATGTGAACTGCCATATTCAATAACCAATCTTGAGAATTTAAAAGTAGTGGTATGCGATGAGGAGACAGCGGCCTCATGGGAAGCATTCGAAGCTTTGCTTCCCAATCTGAAGGTGGAGGTTCCTCAAGTTGATGTTAACCTAAACTGGCTTCATTCAATAAGCTCCTAA 2511 0.3915 MGETDQLVILTRFQDAMRMVMDIVEKGRKNKRSKRILRSTLKNMTLVVQEIKQYNEHLNPPREEIITLVKENDPGEDLVCNSCSRSLWWTKFLSWFSLYGEGLLHEKNDSLTSDDKQVKDIKNTLYKVREIIELLDIENFEQKLKGDGTPIKCPYGVPENPEFTVGFVPVLSKLKMEVLQEGVFTLLLSGMGGSGKTTLATMLCKDKEVKGKFKNNILFVNFSQTPKLKNIVERLFEHCGYHVPEFVSDEDAIKRLEILMRKIEGSPLLLVLDDVWPGSEALVDKFKFQMSDYKILVISRVAFPKFGTQIILKSLVHEDAMTLFRHHALLEENSSKCSLSIPNEEIVQKVVRYCKGLPLAIKVIGRSLSHQSTELWQKMVEELSKGHCILDSNTELLTSLQKILDVLEDNPIIKECFMDLGLFPEDQRIPLPALIDMWAELYKLDDDGIEAMEIIKKLDSMNLANLLVARRNTGDSDNHCYNNHFVVLHDLLRDLAIYQNNREPIEQRKRIITGINENQSQWWLGEKQQGMMSRLLSKYRGWCVKQTIQQVSALILSLSTDETCASYWSDIQPSQAEVLILNLQTKKYTFPEFMEKMIKLKVLIVTNYGFHHSELDNFQLLGSVSNLKRIRLERISVPHLSALKNLKKLSLYMCSNISQVFENGTILVSDSFPSLLDLNIDYCKDMVRLPNGICDISSLKKLSITNCHKLCSLPQEIGQLLNLELLNLSTCTDLEEIPDSIQNLSKLRLLNISNCISLSNLPEDIGNLCNLRNLNMTSCARCELPYSITNLENLKVVVCDEETAASWEAFEALLPNLKVEVPQVDVNLNWLHSISS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium335g00003 836 Gene3D - 151 304 IPR027417 -
Vium335g00003 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 420 IPR027417 -
Vium335g00003 836 PRINTS Disease resistance protein signature 742 758 - -
Vium335g00003 836 PRINTS Disease resistance protein signature 354 368 - -
Vium335g00003 836 PRINTS Disease resistance protein signature 262 276 - -
Vium335g00003 836 PRINTS Disease resistance protein signature 185 200 - -
Vium335g00003 836 Gene3D - 401 500 IPR036388 -
Vium335g00003 836 Pfam NB-ARC domain 181 403 IPR002182 GO:0043531
Vium335g00003 836 SUPERFAMILY RNI-like 586 814 - -
Vium335g00003 836 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 8 831 IPR039203 GO:0050832
Vium335g00003 836 Gene3D - 314 400 IPR042197 -
Vium335g00003 836 Gene3D Ribonuclease Inhibitor 545 813 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium335g00003 Vium-Chr335 12613 16994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium335g00003 623 794 WRKY Transcription Factor Family AT4G12020 28.061 9.24e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium335g00003 - - gmx:100800632 1302.35