Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3355g00008 ATGCAGGCTATCTGGTTGATGCTATTGTTGTTGGTGGACATTGCATTGGGGAATTCAGACATTGATGCTCTCCTTGAATTTAAGAAAAGCATTCAGAATGACCCTTCTGGATTGGTTTTTAATTCTTGGAATTCCAAGTCTTTAGATTCTGATGGATGTCCTAGGAACTGGTATGGAATATGGTGCAGTGAAGGCAGTGTTATATCAATCACTCTGGACAATGCTGGTTTGGTTGGTGACTTTAATTTCCATGCAATTCTTGGCCTTGCAATGCTTCGCAATTTGTCAGCCGTGAACAACCAGTTCACTGGAGAACTCTCACATGCTTCTGCAATGGAATCACTTGAATATCTTGATTTGTCCCTCAACAAGTTTAATGGATCGTTACTCTCTAACTTGGTTCAGTTGCGCAAGTTAGTATATCTGAATCTTTCTTCTAATGAACTTGGAGGCCCTCTTAGTATAGAGTTTCACAAACTTGGGAAGTTGAAGTATTTAGATTTGCACATGAATAACTTTTCTGGGGATATAATGCATACCTTTTATCAGATGGGAAGTGTGCTATATGTTGACTTGAGCAGCAACAGGTTCTCTGGTGCACTGGATTTGGGACTTGTAGATGAATCTTTTCTCTCCTCAATTCAATATTTAAATGTTAGCCATAATTCCTTGAGTGGTGAGTTATTTGTTCATGATGGTATTCCATATCTTGACAATTTAGAGGTGTTCGATGCTAGTAATAATCTGTTAGAGGGTAATATACCTTCCTTTACTTTTGTGGTATCTCTTCGGATACTTCGACTTGCATTCAACCAGCTCACTGGTTTGCTGCCAGAAGCTCTATTGAAGGAAAGTTCAATGATGTTGTCAGAACTGGATCTTAGTCAAAACAAGCTTGAAGGTCCCATTGGAATTATTACCTCGGTGACTCTGAGGAAGCTTAATTTATCTTCAAACAAGTTGTCTGGCCCCTTACCTCTGAGGGTAGGCCACTGTGCTGTCATAGATTTTAGTAATAACACGCTATCAGGTAATTTCTCAAGGATTGGATATTGGGGAAACTATGTGGAAGTTGTTCAGTTAAGTACAAACACATTGATTGGAATGCTTGCAAATGAAACTTCTCAATTTTTAAGGTTAACTGAACTTAAGGCATCCAATAACTTGTTAGAGGGCTTTCTCCCACCAAATTTGGGAACATATCCAGAACTGAAGGAGATTGATCTTAGCCTCAACCAGCTTTCTGGGTTCCTCCTACCAAGCTTTTTTTACTCAACCAAATTGATTAATCTTAATCTCTCCAACAATAAGTTTTCTGGATCAATTCCTGTTCAATTTCAACCTCCAAATACTCCATTGTATTCTACTGAAAATATTAGTCTGGTGTTTCTTGATCTTTCAAACAACAACTTGAGTGGACCTCTTCCTTCAAATATGAGTAGGCTTCACAATTTGGCATATCTCAATTTATGCAACAACAAATTGGAAGGTGCTATTCCTGATGACCTTCCAGATGAGTTGAGAGCATTAAATGTGTCCTTCAATAATTTTTCCGGTGTGGTACCTGAAAACTTAAAGCATTTTCCCGAATCAGCATTTCATCCAGGAAATACTATGCTGGTGTTTCCCCATTCGCAATCATCTCCAAAAGATGCTTCCAACCTAGGTTTGAGGGAACATCGGTTACATAGAAGGTCTGCCACTAGGATAGCCGTTATTGCATGTTTGGTTGCTGGTGCTTTTGTGATGGCTTTTGTGGGCATAATAATTTACTATAAGGTTCATCATGAAAAAGAAAGGGCTTCTAAACAAAATGAAGCTAGAGATATCACTCAAGAGGGTACTTTCACATCAAATACAGAGACAGTTTACAGAAATTTGGAAGCATTGCCACCTTCTAAAAGGGGCTCTTCTGATGCTGCAAGAAACATTCATCCAGTGGGAGAGAAGAACGAGGAAGAAATGTATTCCCCAATGTCTATTTTGTCACCTTCAAATCCTTCATCTTCTAAAAGCTACCAGTTTGAGAATCCTGATTCCCTCCAAGTATCATCTCCAGATAAACTGGTTGGAGACTTGCACATATTTGATGGGTCCTTGGTACTAACTGCCGAAGAACTTTCATGTGCTCCAGCAGAAGTTATTGGCAGGAGCTGTCATGGAACACTTTACAAAGCAACACTAGACTCTGGTCACACATTGGCTGTCAAATGGTTAAGAGAAGGAATAACCAAAGGAAAAAAGGAGTTGGCAAGGGAAATAAAGAAACTTGGGACCATCAAACATCCAAACCTGGTTTCTGTTCAGGGTTACTATCTGGGGCCAAAGGAACATGAGAAACTGATCATATCAAATTACATGAATGCACAATCTTTGGACATTTATCTCCGTGAAGTAGATAAAGCAAATCTACATCCATTGACTCTAGATGAAAGGGTGAGGGTGGCTATAGAAGTGGCACTGTGTCTACATTTCTTACATGATGAGAAAGCCATACCTCATGGCAATCTCAAATCCACAAACATTTTGCTAGAAACTCCCAACAAAAATGTTCTCCTCACAGACTACAGCCTGCACAGGATACTCACTGCTGCAGGTACTACCGAGCAAGTTCTGAATGCCGGCGCACTCGGTTACCGGCCGCCGGAGTTTGCTAGATCGAGCAAACCATGCCCTTCCTTGACAAGTGATGTGTATGCATTTGGAGTGGTGTTGTTAGAGCTCGTAACAGGAAGAAATTCTGGAGAAATAGTTTCTGGGATTCCAGGGGTAGTTGACCTCACTGATTGGGTGAGGTTTTTGGCTGAACAAGAACGTTGGAGCCAATGCTTTGATAGGTTTCTTCTAGTGGAGAAACATAATGGGGAAAAACCCTCAAAAGTACTTGATGAAATGCTAAAGGTGGCTCTAAGATGCATCCTTCCAGCATCTGATAGGCCTAACATGAAAACCGTCTCTGATGATCTCTCAGCAATAATAAGCACTCAACAACAGGCATTATAA 3003 0.4029 MQAIWLMLLLLVDIALGNSDIDALLEFKKSIQNDPSGLVFNSWNSKSLDSDGCPRNWYGIWCSEGSVISITLDNAGLVGDFNFHAILGLAMLRNLSAVNNQFTGELSHASAMESLEYLDLSLNKFNGSLLSNLVQLRKLVYLNLSSNELGGPLSIEFHKLGKLKYLDLHMNNFSGDIMHTFYQMGSVLYVDLSSNRFSGALDLGLVDESFLSSIQYLNVSHNSLSGELFVHDGIPYLDNLEVFDASNNLLEGNIPSFTFVVSLRILRLAFNQLTGLLPEALLKESSMMLSELDLSQNKLEGPIGIITSVTLRKLNLSSNKLSGPLPLRVGHCAVIDFSNNTLSGNFSRIGYWGNYVEVVQLSTNTLIGMLANETSQFLRLTELKASNNLLEGFLPPNLGTYPELKEIDLSLNQLSGFLLPSFFYSTKLINLNLSNNKFSGSIPVQFQPPNTPLYSTENISLVFLDLSNNNLSGPLPSNMSRLHNLAYLNLCNNKLEGAIPDDLPDELRALNVSFNNFSGVVPENLKHFPESAFHPGNTMLVFPHSQSSPKDASNLGLREHRLHRRSATRIAVIACLVAGAFVMAFVGIIIYYKVHHEKERASKQNEARDITQEGTFTSNTETVYRNLEALPPSKRGSSDAARNIHPVGEKNEEEMYSPMSILSPSNPSSSKSYQFENPDSLQVSSPDKLVGDLHIFDGSLVLTAEELSCAPAEVIGRSCHGTLYKATLDSGHTLAVKWLREGITKGKKELAREIKKLGTIKHPNLVSVQGYYLGPKEHEKLIISNYMNAQSLDIYLREVDKANLHPLTLDERVRVAIEVALCLHFLHDEKAIPHGNLKSTNILLETPNKNVLLTDYSLHRILTAAGTTEQVLNAGALGYRPPEFARSSKPCPSLTSDVYAFGVVLLELVTGRNSGEIVSGIPGVVDLTDWVRFLAEQERWSQCFDRFLLVEKHNGEKPSKVLDEMLKVALRCILPASDRPNMKTVSDDLSAIISTQQQAL 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3355g00008 1000 Pfam Leucine rich repeat N-terminal domain 18 63 IPR013210 -
Vium3355g00008 1000 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 17 228 - -
Vium3355g00008 1000 MobiDBLite consensus disorder prediction 658 678 - -
Vium3355g00008 1000 FunFam Leucine-rich repeat receptor-like protein kinase 694 786 - -
Vium3355g00008 1000 SUPERFAMILY L domain-like 32 333 - -
Vium3355g00008 1000 Coils Coil 593 613 - -
Vium3355g00008 1000 ProSiteProfiles Protein kinase domain profile. 709 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3355g00008 1000 Gene3D Ribonuclease Inhibitor 17 184 IPR032675 -
Vium3355g00008 1000 MobiDBLite consensus disorder prediction 648 678 - -
Vium3355g00008 1000 Gene3D Ribonuclease Inhibitor 455 548 IPR032675 -
Vium3355g00008 1000 Gene3D Ribonuclease Inhibitor 356 454 IPR032675 -
Vium3355g00008 1000 Pfam Protein tyrosine and serine/threonine kinase 713 988 IPR001245 GO:0004672|GO:0006468
Vium3355g00008 1000 Gene3D Phosphorylase Kinase; domain 1 715 787 - -
Vium3355g00008 1000 Gene3D Ribonuclease Inhibitor 185 355 IPR032675 -
Vium3355g00008 1000 Gene3D Transferase(Phosphotransferase) domain 1 788 1000 - -
Vium3355g00008 1000 PANTHER OS07G0626500 PROTEIN 5 994 - -
Vium3355g00008 1000 SUPERFAMILY L domain-like 334 528 - -
Vium3355g00008 1000 SUPERFAMILY Protein kinase-like (PK-like) 712 989 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3355g00008 Vium-Chr3355 67240 71704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3355g00008 230 992 Receptor kinase-like Gene Family AT3G51740 31.131 2.95e-82 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium3355g00008 PK_Tyr_Ser-Thr 8.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3355g00008 - - gmx:100781394 1667.9