LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3353g00003	ATGACATTGGTTATCAGAGAGAGGAGACACAAGCAAGCTCTGAGGCTTTCATTACCAAAATCTCCTTCAATCCCATCGTCAAATTCAGATTCCCCTCACCAAATTCATGTACACTCTTCTCCCGGCATGATTAAGGATCTTTCGCATCTTGAAAAGCGAGAAGTTCTTGGCCATGGTAATGGTGGCACAGTTTACAAAGTTTATCACAAAAAAACCAGCTCCTTTTATGCCTTGAAAGTGCTACGTTTGAATGAGAATGGCTTTGGCATTCGCCAAACCGCTAAACTGGAGGCTGACATTCTAAAACGAGTGGATTCACCGTATATAGTGAAGTGTCATGCAGTTTTTGACAGTTGTAATAGCAATAATGATGGCGACAACGGAGGTGACATTAGCTTTGTTATGGAATACATGGAAGGAGGGTCGTTGAATGATGTATTGAGAATACATCATAGACTGTCAGAAAAGGTTATCTCGGTGTTGGGTAGGCGTGTTTTGGAAGGACTTAGGTATTTACATGGCATGAACATTGTGCACAGAGATATTAAACCATCAAACTTACTTGTGAACGATAAAGGGGAGGTAAAGATTGCAGATTTTGGAGTGAGTCATGTGGTGGAAGGTAGGTTTGAAGGAAATGAGTACGATGCAGGCACCTGTGCTTACATGAGTCCAGAAAGGATTGATCCAGAAAGATGGGGTGGTGAAAATGCAGATGAGTTTGCAGGAGATGTGTGGTCAATGGGAGTAGTAATGTTGGAATGTCTTTTGGGTTATTTTCCATTGATTGGAGCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAAGCTGGAGATGCCAGAAAAAGCATCACCAGAGTTTCAAAATTTTGTGAGGAGGTGTCTTGAGAAGAATTGGAGGAAGAGAGCAACAGTGTTAGAACTTCTGCATCACCCTTTTGTGAGTTAA	969	0.4211	MTLVIRERRHKQALRLSLPKSPSIPSSNSDSPHQIHVHSSPGMIKDLSHLEKREVLGHGNGGTVYKVYHKKTSSFYALKVLRLNENGFGIRQTAKLEADILKRVDSPYIVKCHAVFDSCNSNNDGDNGGDISFVMEYMEGGSLNDVLRIHHRLSEKVISVLGRRVLEGLRYLHGMNIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGRFEGNEYDAGTCAYMSPERIDPERWGGENADEFAGDVWSMGVVMLECLLGYFPLIGAGQRPDWATLMCAICFGEKLEMPEKASPEFQNFVRRCLEKNWRKRATVLELLHHPFVS	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3353g00003	322	ProSitePatterns	Protein kinases ATP-binding region signature.	56	79	IPR017441	GO:0005524
	Vium3353g00003	322	PRINTS	Tyrosine kinase catalytic domain signature	135	148	IPR001245	GO:0004672\|GO:0006468
	Vium3353g00003	322	PRINTS	Tyrosine kinase catalytic domain signature	243	265	IPR001245	GO:0004672\|GO:0006468
	Vium3353g00003	322	PRINTS	Tyrosine kinase catalytic domain signature	171	189	IPR001245	GO:0004672\|GO:0006468
	Vium3353g00003	322	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	20	321	-	-
	Vium3353g00003	322	SUPERFAMILY	Protein kinase-like (PK-like)	48	321	IPR011009	-
	Vium3353g00003	322	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	177	189	IPR008271	GO:0004672\|GO:0006468
	Vium3353g00003	322	ProSiteProfiles	Protein kinase domain profile.	50	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3353g00003	322	CDD	PKc_MAPKK_plant_like	48	321	-	-
	Vium3353g00003	322	MobiDBLite	consensus disorder prediction	15	40	-	-
	Vium3353g00003	322	SMART	serkin_6	50	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3353g00003	322	MobiDBLite	consensus disorder prediction	19	36	-	-
	Vium3353g00003	322	Gene3D	Transferase(Phosphotransferase) domain 1	44	322	-	-
	Vium3353g00003	322	Pfam	Protein kinase domain	51	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3353g00003	322	FunFam	Mitogen-activated protein kinase kinase 1	28	139	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3353g00003	Vium-Chr3353	38340	39589	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3353g00003	1	321	MAP Kinase Kinase Gene Family	AT1G32320	54.740	7.87e-111	322

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Vium3353g00003		Pkinase	1.2e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3353g00003	K20604		-	vra:106777505	622.468