Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium334g00010 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTCAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTGCACTTAAGGCCTACATTGAAAAGAACGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAATCTTTACATTAGCATTGGTAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAACTGCTTGGGAGGCGCAAACAATCTAACTTCAACACAAAGGACACAAATAATGGAATAGAGGAGAACTCTTATTCAAATGCCCTAAGCAGCTCAGCCCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAATAACCCTGCGTTGTGGCCTAAGTTGCATCCTTTCCAAGAAAAGATGATCCAGAGCCTGCAATCTTTGAATGACGGCTCTAATCCTGTGGTGCAAGATGCTTTGCCTACCCCCCATGTCGAACAAGGACAAAAAGATGAGTTCATCTACAAGCCTCAACATGATGGTGCAAAGATCCATAGCCCACAGGTTCATCTTCTGGAGAATATTCCTTCAAGTAACAGTGGAGTTTCCTTTGTTGCTTCTGAGAGCAATAATAATCCAATGCACTCAAGTCTTGCACCAAGAGCTGAGGCTGTTGAACAGACTAATAATGTGGGATTTCAGCAACTCGGTGCACTGCAAACTGAACTAGATGACATTCTGAACAACAGAACAATGGGTTACGTGCCTCAGGAAGATCATCAGATGGCTGAATTTGATTGTTTCAGAGAGATGAATGGTTCCAAGGACAGCCTGATTTGGTGGTCCAATGATTCTGATACCAGATCAGCATCCTCAAATTCCTGGGATTCATCTGCTACTCCAGCTCTTTTAACACAAGGGATGTTCCAAGATTATGAACTGGGTTACAGTCTGTAG 1086 0.4328 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNTKDTNNGIEENSYSNALSSSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPFQEKMIQSLQSLNDGSNPVVQDALPTPHVEQGQKDEFIYKPQHDGAKIHSPQVHLLENIPSSNSGVSFVASESNNNPMHSSLAPRAEAVEQTNNVGFQQLGALQTELDDILNNRTMGYVPQEDHQMAEFDCFREMNGSKDSLIWWSNDSDTRSASSNSWDSSATPALLTQGMFQDYELGYSL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium334g00010 361 Gene3D - 70 142 - -
Vium334g00010 361 FunFam Transcription factor MYB36 70 139 - -
Vium334g00010 361 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium334g00010 361 CDD SANT 71 113 IPR001005 -
Vium334g00010 361 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium334g00010 361 PANTHER OS09G0431300 PROTEIN 1 343 - -
Vium334g00010 361 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium334g00010 361 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vium334g00010 361 FunFam Transcription factor RAX3 7 68 - -
Vium334g00010 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium334g00010 361 CDD SANT 16 62 IPR001005 -
Vium334g00010 361 SMART sant 13 64 IPR001005 -
Vium334g00010 361 SMART sant 67 115 IPR001005 -
Vium334g00010 361 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium334g00010 361 Gene3D - 7 68 - -
Vium334g00010 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium334g00010 Vium-Chr334 69319 71169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium334g00010 1 197 MYB Transcription Factor Family AT5G57620 74.510 5.63e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium334g00010 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium334g00010 K09422 - gmx:778083 645.58