Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium334g00006 ATGGGGTTTGAAAAAAAAATTGACAAGTATCAGCTTGTTAGGACCATTGGAGAAGGTAGCTTCTCTAAGGTTAAGCTGGCTGTCAATGGCACCAATGGTCAGAAGGTTGCGGTCAAGGTCATTGATAAGCATATGATCTTAGAAAACAATCTTAAGACTCAGGTTAAAAGAGAGATCAGAACAATGAAACTTCTGCATCATCCCAATATAGTTAGCATTCACGAGGTTATTGGCACAAAAACGAAGATATACATCGTGATGGAATATGTATCAGGAGGACAACTACTAGACAAGTTGTCCTATGGAGAGAAGTTGAATGAACGTGAGGCAAGAAAACTGTTCCAGCAACTAATTGATGCCCTGGACTACTGCCATAACAAAGGGGTCTATCATCGAGATCTCAAGCCAGAAAACCTGCTTCTTGACAGCAAGGGAAATCTCAAAGTGTCTGACTTTGGATTAAGTGCATTACAAAAGTGTAATGATGTCTTGACCACGCGGTGTGGATCCCCATGTTATGTAGCACCTGAGCTTCTATTGAGCAAGGGGTATAATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATTCTTTTTGAATTACTTGCAGGCTATTTACCATTTAACGACCAGAACTTGATGAACTTATATGGAAAGATATGGAAGTCAGAATATAAATGTCCCACGTGGTTTACTCGGAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTCCTGCAAAGCGGATAACTATATCAGATATTATTGAAGATCCGTGGTTTCAAAAAGATTACAAGCCTGTTTTTGCATCTGAATTTGATCAGAACATTAACTCGGAGGATGTTGATGTTGCTTTCAATTCAATAGAGGAAAATGTCAGAGAGACAACGGTATCTAAGTCCTCAAGTTTCATTAATGCGTTTCAACTAATAGCCATGTCTCGGGATCTTGATCTATCTGGTCTTTTTGTCGAACAGGATGAAAATAAGCAGACAAAAAGGATGGGATCCAAACACACTATCAATGAAACGATAGAAAAAATAGAAGCTGCTGCAACCGATGCAAGACTGTCGATAGAGAAAATTAGCAACTTTAAGATAAAAATGCAACCGAAACAGACAATGGCCACGACCAGTTTCAGATCATACTTATCAGCTCAGGTGATTGAAGTTGCTCCAACTCACTGTGTTGTAGAAATATCAAAATCTACTGAAGATATAAGAACGTATAACAAATTTTGTGAAAGTTTATCAAATCTGCTGAAGCAAAAACCTGGTGTGCCATCACAAAGCGAAGATTATGTAGATCAATGTGCCTCTGATAGAAAAAAACACGACGCTGAATGCTATGAAGAGCCGAAAAGGGAATATGTCAAACTTTTTCGTGGCTACGAATCTTCCTGA 1407 0.3909 MGFEKKIDKYQLVRTIGEGSFSKVKLAVNGTNGQKVAVKVIDKHMILENNLKTQVKREIRTMKLLHHPNIVSIHEVIGTKTKIYIVMEYVSGGQLLDKLSYGEKLNEREARKLFQQLIDALDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKCNDVLTTRCGSPCYVAPELLLSKGYNGAAADVWSCGVILFELLAGYLPFNDQNLMNLYGKIWKSEYKCPTWFTRSQKKLIAKILEPRPAKRITISDIIEDPWFQKDYKPVFASEFDQNINSEDVDVAFNSIEENVRETTVSKSSSFINAFQLIAMSRDLDLSGLFVEQDENKQTKRMGSKHTINETIEKIEAAATDARLSIEKISNFKIKMQPKQTMATTSFRSYLSAQVIEVAPTHCVVEISKSTEDIRTYNKFCESLSNLLKQKPGVPSQSEDYVDQCASDRKKHDAECYEEPKREYVKLFRGYESS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium334g00006 468 CDD CIPK_C 307 424 - -
Vium334g00006 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 417 - -
Vium334g00006 468 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium334g00006 468 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Vium334g00006 468 FunFam Non-specific serine/threonine protein kinase 1 89 - -
Vium334g00006 468 FunFam Non-specific serine/threonine protein kinase 3 303 - -
Vium334g00006 468 Gene3D Kinase associated domain 1, KA1 301 424 - -
Vium334g00006 468 FunFam Non-specific serine/threonine protein kinase 301 425 - -
Vium334g00006 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vium334g00006 468 Pfam NAF domain 304 362 IPR004041 GO:0007165
Vium334g00006 468 Gene3D Transferase(Phosphotransferase) domain 1 95 291 - -
Vium334g00006 468 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium334g00006 468 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Vium334g00006 468 SUPERFAMILY Protein kinase-like (PK-like) 7 263 IPR011009 -
Vium334g00006 468 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium334g00006 468 Gene3D Phosphorylase Kinase; domain 1 3 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium334g00006 Vium-Chr334 44499 49237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium334g00006 87 422 CBL-interacting serine-threonine protein kinases AT5G57630 60.059 8.22e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium334g00006 Pkinase 3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium334g00006 - - vun:114177464 879.396