Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3346g00008 ATGGAGTCATTGTCTCTCAGACTCTTCACTCTCACCGTTCTGCTTGCGGTGTTGTTTTCTGCTGCCTCCAACGCAGTCAATGAAAGTGAGATCACCAAACACAAGGCCACAGAATCAAGGGATGTGGTTGAGGAAAAGAAGTTGCGTGGTCAGAGCTTGAAGAATTCGTCTATGGCAGAAAGTTTGGAGGATGCTTTGAATGAACATGCAATTGATAATCCAGAGGAGATTGCTTCTATGGTTGATGAGAGCATCCGCAATTCGACGGCTCGAAGGAATCTGAATTTCTTCTCATGCGGGACGGGGAACCCAATCGATGACTGCTGGCGGTGCGACAAGCGGTGGTACCTCCGGCGAAAGAAGCTCGCCAACTGCGGCATCGGCTTCGGCCGCAACGCGATCGGCGGGCGCGACGGCCGCTACTACGTGGTGACGAATCCGAACGACGACGACCCCGTGAACCCAAAACCGGGAACGCTCCGGCACGCCGTGATTCAGGACCAACCCCTGTGGATCGTGTTCAAGAGGGACATGGTGATCACACTGAAGCAGGAGCTGATAATGAACAGCTTCAAGACCATCGACGGGCGCGGCGTCAACGTCCACATCGCCTACGGCGCGTGCATAACCATCCAGTTCATCACCAACGTCATCATCCACGGCCTCCACATTCACGACTGCAAGCCAACGGGCAACGCCATGGTTCGCAGCTCCCCCTCCCACTACGGATGGAGAACGCTCGCTGACGGGGATGGCATCTCCATCTTTGGTTCAAGCCACATTTGGATCGACCATAACTCCCTCTCCAGTTGCTCTGATGGACTCGTCGACGCCATTATGGGCTCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTCATGCTTCTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGGATGCCCAGGTGCAGACACGGGTATTTCCACGTGGTTAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACAATTAACAGCCAAGGCAACAGATACCTTGCTCCTTTGAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTAGACACGGGTGCATCCGTATGGAAAAGTTGGAATTGGAGGTCTGAAGGAGACCTTTTGCTGAATGGAGCCTATTTCACCTCTTCGGGAGCAGGAGCTGCAGCGAGCTATGCTAGAGCCTCAAGTTTGGGGGCGAAATCATCTTCTTTGGTTGGTACCCTTACCTCTGGAGCTGGTGTTCTTGACTGTCGCAGGGGTAACATGTGTTAA 1356 0.5265 MESLSLRLFTLTVLLAVLFSAASNAVNESEITKHKATESRDVVEEKKLRGQSLKNSSMAESLEDALNEHAIDNPEEIASMVDESIRNSTARRNLNFFSCGTGNPIDDCWRCDKRWYLRRKKLANCGIGFGRNAIGGRDGRYYVVTNPNDDDPVNPKPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSSCSDGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPLNPFAKEVTKRVDTGASVWKSWNWRSEGDLLLNGAYFTSSGAGAAASYARASSLGAKSSSLVGTLTSGAGVLDCRRGNMC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3346g00008 451 PANTHER PECTATE LYASE 18-RELATED 70 449 IPR045032 GO:0030570
Vium3346g00008 451 SMART amb_all 177 374 IPR002022 -
Vium3346g00008 451 Pfam Pectate lyase 186 366 IPR002022 -
Vium3346g00008 451 Gene3D - 102 444 IPR012334 -
Vium3346g00008 451 SUPERFAMILY Pectin lyase-like 80 445 IPR011050 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Vium3346g00008 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Vium3346g00008 451 FunFam Pectate lyase 102 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3346g00008 Vium-Chr3346 113511 119269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3346g00008 51 451 Polysaccharide Lyase AT4G13710 78.240 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3346g00008 K01728 - gmx:100809277 810.446