Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3346g00007 ATGGAAAAGGTCCGGAAGGTAACTAATGATGGAGAAAGCCAAAGAGAAGATGCCTCCAGGGTTTTTCCCTGCCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTCTGGGAGGACACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGGAAGGCCAAGAGGGAATCTGTGTACACAAGTGTTTGCTTTCCTTCCTCACTGCCAGGCCCTATGATTTTTGCTCCAACCCATCTAGACATTTTAAATACTTCCATGATCATCACTGCCCATGCAGCAGAACTCTCTTATCTCCAAAACCATCAAATTTCCAAACAATTTGGATCAAATGGTGCACCTAGATTTGGCAACTCACTGTTCTATGAGGGAACTAACAGGGTACATGGTGAAGGGAAGAACTACAATGTCAGCTGGGGGGACACATCTCAATCCAAATTATTTATAAGTTACGATCAAAATCTTGGAATTTGGAATGACGGTACCGAGAAGGAACAAAAGCTTGATTTATCTCTCCATTTGTAG 525 0.421 MEKVRKVTNDGESQREDASRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKRESVYTSVCFPSSLPGPMIFAPTHLDILNTSMIITAHAAELSYLQNHQISKQFGSNGAPRFGNSLFYEGTNRVHGEGKNYNVSWGDTSQSKLFISYDQNLGIWNDGTEKEQKLDLSLHL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3346g00007 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Vium3346g00007 174 PANTHER ZINC FINGER PROTEIN JAGGED 16 174 IPR045320 GO:0003700
Vium3346g00007 174 SUPERFAMILY beta-beta-alpha zinc fingers 20 49 IPR036236 -
Vium3346g00007 174 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Vium3346g00007 174 Gene3D Classic Zinc Finger 3 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3346g00007 Vium-Chr3346 66637 67390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3346g00007 20 53 C2H2 Transcription Factor Family AT5G14010 76.471 1.44e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3346g00007 - - vra:106759055 320.472