Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3346g00006 ATGGTGGTTATAGAACAGGAAGAGAGCGAGCACCGAAATGCGAGCCGCTCCAACGCTGCCGGCGCTGCCAACGACGCTTCCGATGGCTTCGAAACCGCCAGCGAGGCCGATCTCGCCAGTGATGATGACGGCGGAGATGGTGGAGCAGACAGACAACAGGAGCAGAATCACCCCGAGGAACACCACCGGCAGCAGCAGACTGAGCAACAACCTGAACGCGATGTTCCTCAGAGCACCGCCGAATCCTCTGAGAATGCCTTGATCGCTGAAGAGTCCCCCGAGAATGCGTTGATCAACGAAGAAGAATCTAGACAGAAAGCATTGGATCAAGCAAATGAAGCAAAGTTAGAAGGCAACAAACTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATCACAGTATGAAGTTGCTTTACAAGTAGCACCAGACACACCTTCATCTGTGGAAATACGGTCAATATGCCACTCGAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATCAAGGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAGGCTTTCGTGAGAAGAGGAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAAGTATTCGGCGCCTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAAATGAAGGAGGAAATGATTGGAAAATTGAAAGATATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGTGTGGACAACTTTAAAGCCGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 852 0.473 MVVIEQEESEHRNASRSNAAGAANDASDGFETASEADLASDDDGGDGGADRQQEQNHPEEHHRQQQTEQQPERDVPQSTAESSENALIAEESPENALINEEESRQKALDQANEAKLEGNKLFVDGKYEEALSQYEVALQVAPDTPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKAFVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKSIRRLEPLAAEKREKMKEEMIGKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3346g00006 283 Coils Coil 97 117 - -
Vium3346g00006 283 Pfam Tetratricopeptide repeat 187 219 IPR013105 -
Vium3346g00006 283 MobiDBLite consensus disorder prediction 1 110 - -
Vium3346g00006 283 MobiDBLite consensus disorder prediction 70 89 - -
Vium3346g00006 283 MobiDBLite consensus disorder prediction 44 69 - -
Vium3346g00006 283 ProSiteProfiles TPR repeat profile. 111 144 IPR019734 GO:0005515
Vium3346g00006 283 SUPERFAMILY TPR-like 107 230 IPR011990 GO:0005515
Vium3346g00006 283 ProSiteProfiles TPR repeat profile. 152 185 IPR019734 GO:0005515
Vium3346g00006 283 SMART tpr_5 186 219 IPR019734 GO:0005515
Vium3346g00006 283 SMART tpr_5 152 185 IPR019734 GO:0005515
Vium3346g00006 283 SMART tpr_5 111 144 IPR019734 GO:0005515
Vium3346g00006 283 Pfam Tetratricopeptide repeat 154 183 IPR001440 GO:0005515
Vium3346g00006 283 Gene3D Tetratricopeptide repeat domain 49 247 IPR011990 GO:0005515
Vium3346g00006 283 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Vium3346g00006 283 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3346g00006 Vium-Chr3346 67810 75386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3346g00006 58 242 Calmodulin-binding Proteins AT3G25230 34.197 4.04e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3346g00006 K24926 - gmx:100808386 394.045