Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3346g00003 ATGTTAGGTACCAATATTGGTAAGGATCCTAGCATGTTTCCTCAACATGCCCAACAAGATCTATCTGCTAGTGTTTCAAGTACAGGGCATCATGTGCAAAATAATATCACTATGGAGGCAGGGGAAGAATTTTACGTGAATGTTGGTCGTGATGGAATTGCTGCTGGAAGGGTTCTTGTTTCACCAGATATACCACGAAATCATGAGAATGTGTTTGGTTTGACTAGAGAGAATGGCAATGTGAGATATGAAGATCTTACTAACATTTTGGGGCTGAGGAGAATGAACTCTGAGAATTCTTCTGATATATCTGACTTTTTATCTTTAAAACAGTCAGTACAGGAGATGGAAAATGGAGCTTCTGTAAACATTTCAAACAAAATTCAAAAGGGTGATGGTATGTTGAGGAAGGCTGTTCAAGAACCAGTGGGTGACCAGTCTGGTCTCGCAGTTGTATCACCACTTTGTAGATATGAAGCTTCTCAGTCCAATGGATTTTCTGGTTCAGGAGTCGTAGATGATTTTCTGTCTGGGAAAATGAAGTTTCTGTGCAGTTTTGGTGGAAAAATATTACCAAGACCCAGTGATGGGAAACTCAGATATGTAGGCGGAGAGACCCACATCATATCTATCCAAAAGGATATGGCGTGGCAAGAGCTTATGCAGAAGACCTTGGGCATTTGCAATCAACCTCACACAATAAAGTACCAGCTTCCAGGAGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGAGGAAGATCTTCAAAATATGAAAGAGGAATACCATGGGCTTGAAAGGCATGAACGTTCTCAAAAACTTAGAATTTTTTTAGTTCCTTTGGGTGAATCCGAAGAGACATCATCAACAGAGGTGAATGCTGTTCAACAGAGTGATCCTGATTACCAATATGTTGTTGCTGTAAATGGTATGGGAGACTCTACTAGAACAAACATCGGTGGGCAAAATTTGACAAATGCATCCAGTCAGTTGGGAGCAGATTTGAACTTTACTCCAGTTCTTCCAAAAACTCCAAATGCTTCTCCAGATGGTCTTTTTAATGATTCCCTGAATGTGCAAAGGCCCTTGTCAATTCCTCCCGCTCCAATTCCGATATCAGGTTCTAACACAGGTTATATACAATTACTGGGTGACCACTCATGTCAGGGAAGCATTGAGAGCAATGCATCATATGCTCAGCTATATCCTGAGTGCTCTAATATAAGCACTGCTGGTTGCATATATCCTCAGCACGTGAGTGACACTTGTCCTTATCAGCATGGTGATGTTAGTCAGCCCACGAAGCTCAATGGAGGTCCTAGCAAGGAATTAGTGACTCCTGTTTATGTTAATCCCAGAGATGAATTTTTTGGTGGAAGGTCCTTGCAAAGGGAAAGGGTCTTCTCTAAAACTCCTCTTTCATTGTTGGATGATGTAATTTGTCGACAGGGTGAATCTTATGGAATTACAGACTCCCCTCATGGGATGCCCCATGCCTTTTCTGATCCACAGTTGCTACGAAGTGGAGCAAAGTCTGGTTACTGCTCCCAAAATGGAAATGGTCAATCTTTCTCCCTGAACCTTGAAAAGGGTCAAATATCTTCATTGTTAATCCCTAGTGTCTCACGGGTGAAAGTCACGGAGCATCCACATGATTCTTTTGTCCATCATCCTCAAATACAAAGTACGACACCAGAAGGAGAGTCAGCCCAGGCACCCAAAAGGCAAGATTTGACATCTTCTCCATACTATGAATCCATGGGAATGAATAATCTTGTTCACATGGATAACACATTAGCTGAAAAAAAGAACTCAATTGCTCAAACTGACTTGGGTATACCCAGCTACGATGCAAAGGATGTTCAGGAAAATTCTGTGAATTTAGAAAGGATGAAGATAGTTGAACAAAAGAATTTTATTCCCAAGGATAGCAAGGTTCAGCAGGGGAAATCAACTGCCATTGACAAGGGATTTGTGACTGAGTTGCATCTCTTGAACTCCTTCCCTGCTAATAACTTAAATGCTAATATTAACATGCAAAAGAATTGGGATCTACCTTTTGAGGGTATTGTCCCTATTCCATCAGACACGATGGATCTCTCCTTAAATAATTTTTTGGAAAAGACCATATGTGATTCTAACATGAGCCAAAGGACTAGTGAGCACAAAATCAACGCTTTGGCTAAAGGTCTGAATGGTGTACAAGGGTTTGATTTTTCATTGACCAGAAATTTTGAATTAAATGCTCCAATATTAAATTCTGAAGTAGGTTCCAGTGATAAAAGTTCCCGAGGAGGTTATACTAATAAGCTGTCCATTCATCCAGCTTCTCATAAAGCTGCACAAATCCATCCTTCGAAGAATCAGATGGATGTAGCTTTTGAAGAAAATCCTACAGCAAGCTATGGAAGTTTGTATCCTGCTGCATTTTGTGATGATCTTGGTCCAAGTGTAAACATGCCTATGAATGGCCCTGATATATCAGGCACTATTATGTCACTTAAAAAGGCACCACCTTTCCTTGATGACTTCATTACCAGCACTGGTCAAGTGGTGGATCAGTTTATCCCCAAACAGTATGCCTCTGGAATGTCAAATGTTGAAGATAAAGTTTCAGAACAACAAAATTTTTTAGAAGGCTACACTGATGTGAATCAAGTGGAGACGTTCAATGTAACAGACATGACTCGTGTTGTTAATCCTTATATTTCTAGTGATATTGGAAGTGTTGTATCCCTATCTCATACAGAAGTTGGGAGCATCATCCCTGGGTTTGAGCCTGAGGATTTTAATGAAGACAAAAATGAATTCTTTTCTGATGCAATGATAGCAGAAATGGAGGCTAGCATTTATGGTTTACAGATAATAAGGAATGCTGATCTTGAAGAACTTACAGAGTTGGGTTCTGGTACTTATGGCACTGTTTATCATGGAAAATGGCGGGGAACAGATATTGCTATAAAGAGAATTAAAAAGAGTTGCTTTGTTGGAAGGTCTTCTGAGCAAGAACGGTTGGCAAAAGATTTTTGGAGAGAAGCACAAATCCTTTCAAATCTTCATCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGGCGGAAGGAACCTTAGCAACTGTAACAGAATACATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAATAGATTACTTGATCGCCGTAAAAAGCTAATAATTGCCATGGATGCCGCTTTCGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTGAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCCTTGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCGGAGCTGTTGAATGGGAATAGCAGTCGTGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTGAGGCCTCCTGTGCCTGAACGGTGTGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCTGAAAGCCGGCCATCATTCACAGAGATAACCAGCAGGTTAAGATCCATGTCTCTACTCCTTCAAACAAAAGGGTTAAGACCCTTCTGA 3720 0.407 MLGTNIGKDPSMFPQHAQQDLSASVSSTGHHVQNNITMEAGEEFYVNVGRDGIAAGRVLVSPDIPRNHENVFGLTRENGNVRYEDLTNILGLRRMNSENSSDISDFLSLKQSVQEMENGASVNISNKIQKGDGMLRKAVQEPVGDQSGLAVVSPLCRYEASQSNGFSGSGVVDDFLSGKMKFLCSFGGKILPRPSDGKLRYVGGETHIISIQKDMAWQELMQKTLGICNQPHTIKYQLPGEDLDALISVSSEEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEETSSTEVNAVQQSDPDYQYVVAVNGMGDSTRTNIGGQNLTNASSQLGADLNFTPVLPKTPNASPDGLFNDSLNVQRPLSIPPAPIPISGSNTGYIQLLGDHSCQGSIESNASYAQLYPECSNISTAGCIYPQHVSDTCPYQHGDVSQPTKLNGGPSKELVTPVYVNPRDEFFGGRSLQRERVFSKTPLSLLDDVICRQGESYGITDSPHGMPHAFSDPQLLRSGAKSGYCSQNGNGQSFSLNLEKGQISSLLIPSVSRVKVTEHPHDSFVHHPQIQSTTPEGESAQAPKRQDLTSSPYYESMGMNNLVHMDNTLAEKKNSIAQTDLGIPSYDAKDVQENSVNLERMKIVEQKNFIPKDSKVQQGKSTAIDKGFVTELHLLNSFPANNLNANINMQKNWDLPFEGIVPIPSDTMDLSLNNFLEKTICDSNMSQRTSEHKINALAKGLNGVQGFDFSLTRNFELNAPILNSEVGSSDKSSRGGYTNKLSIHPASHKAAQIHPSKNQMDVAFEENPTASYGSLYPAAFCDDLGPSVNMPMNGPDISGTIMSLKKAPPFLDDFITSTGQVVDQFIPKQYASGMSNVEDKVSEQQNFLEGYTDVNQVETFNVTDMTRVVNPYISSDIGSVVSLSHTEVGSIIPGFEPEDFNEDKNEFFSDAMIAEMEASIYGLQIIRNADLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFVGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAEGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDSEWRKLMEECWSPDPESRPSFTEITSRLRSMSLLLQTKGLRPF 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3346g00003 1239 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 954 1048 - -
Vium3346g00003 1239 Gene3D - 198 280 - -
Vium3346g00003 1239 ProSiteProfiles Protein kinase domain profile. 961 1230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3346g00003 1239 PRINTS Tyrosine kinase catalytic domain signature 1043 1056 IPR001245 GO:0004672|GO:0006468
Vium3346g00003 1239 PRINTS Tyrosine kinase catalytic domain signature 1195 1217 IPR001245 GO:0004672|GO:0006468
Vium3346g00003 1239 PRINTS Tyrosine kinase catalytic domain signature 1080 1098 IPR001245 GO:0004672|GO:0006468
Vium3346g00003 1239 PRINTS Tyrosine kinase catalytic domain signature 1151 1173 IPR001245 GO:0004672|GO:0006468
Vium3346g00003 1239 SUPERFAMILY Protein kinase-like (PK-like) 949 1223 IPR011009 -
Vium3346g00003 1239 MobiDBLite consensus disorder prediction 553 576 - -
Vium3346g00003 1239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1086 1098 IPR008271 GO:0004672|GO:0006468
Vium3346g00003 1239 MobiDBLite consensus disorder prediction 1 28 - -
Vium3346g00003 1239 ProSitePatterns Protein kinases ATP-binding region signature. 967 992 IPR017441 GO:0005524
Vium3346g00003 1239 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1049 1237 - -
Vium3346g00003 1239 Gene3D Transferase(Phosphotransferase) domain 1 1049 1234 - -
Vium3346g00003 1239 MobiDBLite consensus disorder prediction 11 28 - -
Vium3346g00003 1239 CDD PB1_UP2 183 278 - -
Vium3346g00003 1239 SMART serkin_6 961 1230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3346g00003 1239 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 199 281 - -
Vium3346g00003 1239 SMART PB1_new 194 281 IPR000270 GO:0005515
Vium3346g00003 1239 Gene3D Phosphorylase Kinase; domain 1 954 1048 - -
Vium3346g00003 1239 Coils Coil 248 268 - -
Vium3346g00003 1239 PANTHER SERINE-THREONINE PROTEIN KINASE 224 1226 - -
Vium3346g00003 1239 Pfam PB1 domain 196 280 IPR000270 GO:0005515
Vium3346g00003 1239 Pfam Protein tyrosine and serine/threonine kinase 964 1224 IPR001245 GO:0004672|GO:0006468
Vium3346g00003 1239 MobiDBLite consensus disorder prediction 556 576 - -
Vium3346g00003 1239 CDD STKc_MAP3K-like 967 1224 - -
Vium3346g00003 1239 SUPERFAMILY CAD & PB1 domains 195 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3346g00003 Vium-Chr3346 21673 43616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3346g00003 176 432 MAP Kinase Kinase Kinase AT1G16270 41.516 9.07e-43 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium3346g00003 PK_Tyr_Ser-Thr 8.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3346g00003 - - pvu:PHAVU_008G122700g 2014.19