Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3346g00002 ATGTTAGGTACCAATATTGGTAAGGATCCTAGCATGTTTCCTCAACATGCCCAACAAGATCTATCTGCTAGTGTTTCAAGTACAGGGCATCATGTGCAAAATAATATCACTATGGAGGCAGGGGAAGAATTTTACGTGAATGTTGGTCGTGATGGAATTGCTGCTGGAAGGGTTCTTGTTTCACCAGATATACCACGAAATCATGAGAATGTGTTTGGTTTGACTAGAGAGAATGGCAATGTGAGATATGAAGATCTTACTAACATTTTGGGGCTGAGGAGAATGAACTCTGAGAATTCTTCTGATATATCTGACTTTTTATCTTTAAAACAGTCAGTACAGGAGATGGAAAATGGAGCTTCTGTAAACATTTCAAACAAAATTCAAAAGGGTGATGGTATGTTGAGGAAGGCTGTTCAAGAACCAGTGGGTGACCAGTCTGGTCTCGCAGTTGTATCACCACTTTGTAGATATGAAGCTTCTCAGTCCAATGGATTTTCTGGTTCAGGAGTCGTAGATGATTTTCTGTCTGGGAAAATGAAGTTTCTGTGCAGTTTTGGTGGAAAAATATTACCAAGACCCAGTGATGGGAAACTCAGATATGTAGGCGGAGAGACCCACATCATATCTATCCAAAAGGATATGGCGTGGCAAGAGCTTATGCAGAAGACCTTGGGCATTTGCAATCAACCTCACACAATAAAGTACCAGCTTCCAGGAGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGAGGAAGATCTTCAAAATATGAAAGAGGAATACCATGGGCTTGAAAGGCATGAACGTTCTCAAAAACTTAGAATTTTTTTAGTTCCTTTGGGTGAATCCGAAGAGACATCATCAACAGAGGTGAATGCTGTTCAACAGAGTGATCCTGATTACCAATATGTTGTTGCTGTAAATGGTATGGGAGACTCTACTAGAACAAACATCGGTGGGCAAAATTTGACAAATGCATCCAGTCAGTTGGGAGCAGATTTGAACTTTACTCCAGTTCTTCCAAAAACTCCAAATGCTTCTCCAGATGGTCTTTTTAATGATTCCCTGAATGTGCAAAGGCCCTTGTCAATTCCTCCCGCTCCAATTCCGATATCAGGTTCTAACACAGGTTATATACAATTACTGGGTGACCACTCATGTCAGGGAAGCATTGAGAGCAATGCATCATATGCTCAGCTATATCCTGAGTGCTCTAATATAAGCACTGCTGGTTGCATATATCCTCAGCACGTGAGTGACACTTGTCCTTATCAGCATGGTGATGTTAGTCAGCCCACGAAGCTCAATGGAGGTCCTAGCAAGGAATTAGTGACTCCTGTTTATGTTAATCCCAGAGATGAATTTTTTGGTGGAAGGTCCTTGCAAAGGGAAAGGGTCTTCTCTAAAACTCCTCTTTCATTGTTGGATGATGTAATTTGTCGACAGGGTGAATCTTATGGAATTACAGACTCCCCTCATGGGATGCCCCATGCCTTTTCTGATCCACAGTTGCTACGAAGTGGAGCAAAGTCTGGTTACTGCTCCCAAAATGGAAATGGTCAATCTTTCTCCCTGAACCTTGAAAAGGGTCAAATATCTTCATTGTTAATCCCTAGTGTCTCACGGGTGAAAGTCACGGAGCATCCACATGATTCTTTTGTCCATCATCCTCAAATACAAAGTACGACACCAGAAGGAGAGTCAGCCCAGGCACCCAAAAGGCAAGATTTGACATCTTCTCCATACTATGAATCCATGGGAATGAATAATCTTGTTCACATGGATAACACATTAGCTGAAAAAAAGAACTCAATTGCTCAAACTGACTTGGGTATACCCAGCTACGATGCAAAGGATGTTCAGGAAAATTCTGTGAATTTAGAAAGGATGAAGATAGTTGAACAAAAGAATTTTATTCCCAAGGATAGCAAGGTTCAGCAGGGGAAATCAACTGCCATTGACAAGGGATTTGTGACTGAGTTGCATCTCTTGAACTCCTTCCCTGCTAATAACTTAAATGCTAATATTAACATGCAAAAGAATTGGGATCTACCTTTTGAGGGTATTGTCCCTATTCCATCAGACACGATGGATCTCTCCTTAAATAATTTTTTGGAAAAGACCATATGTGATTCTAACATGAGCCAAAGGACTAGTGAGCACAAAATCAACGCTTTGGCTAAAGGTCTGAATGCTTCTCATAAAGCTGCACAAATCCATCCTTCGAAGAATCAGATGGATGTAGCTTTTGAAGAAAATCCTACAGCAAGCTATGGAAGTTTGTATCCTGCTGCATTTTGTGATGATCTTGGTCCAAGTGTAAACATGCCTATGAATGGCCCTGATATATCAGGCACTATTATGTCACTTAAAAAGGCACCACCTTTCCTTGATGACTTCATTACCAGCACTGGTCAAGTGGTGGATCAGTTTATCCCCAAACAGTATGCCTCTGGAATGTCAAATGTTGAAGATAAAGTTTCAGAACAACAAAATTTTTTAGAAGGCTACACTGATGTGAATCAAGTGGAGACGTTCAATGTAACAGACATGACTCGTGTTGTTAATCCTTATATTTCTAGTGATATTGGAAGTGTTGTATCCCTATCTCATACAGAAGTTGGGAGCATCATCCCTGGGTTTGAGCCTGAGGATTTTAATGAAGACAAAAATGAATTCTTTTCTGATGCAATGATAGCAGAAATGGAGGCTAGCATTTATGGTTTACAGATAATAAGGAATGCTGATCTTGAAGAACTTACAGAGTTGGGTTCTGGTACTTATGGCACTGTTTATCATGGAAAATGGCGGGGAACAGATATTGCTATAAAGAGAATTAAAAAGAGTTGCTTTGTTGGAAGGTCTTCTGAGCAAGAACGGTTGGCAAAAGATTTTTGGAGAGAAGCACAAATCCTTTCAAATCTTCATCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGGCGGAAGGAACCTTAGCAACTGTAACAGAATACATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAATAGATTACTTGATCGCCGTAAAAAGCTAATAATTGCCATGGATGCCGCTTTCGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTGAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCCTTGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCGGAGCTGTTGAATGGGAATAGCAGTCGTGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTGAGGCCTCCTGTGCCTGAACGGTGTGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCTGAAAGCCGGCCATCATTCACAGAGATAACCAGCAGGTTAAGATCCATGTCTCTACTCCTTCAAACAAAAGGGTTAAGACCCTTCTGA 3591 0.4091 MLGTNIGKDPSMFPQHAQQDLSASVSSTGHHVQNNITMEAGEEFYVNVGRDGIAAGRVLVSPDIPRNHENVFGLTRENGNVRYEDLTNILGLRRMNSENSSDISDFLSLKQSVQEMENGASVNISNKIQKGDGMLRKAVQEPVGDQSGLAVVSPLCRYEASQSNGFSGSGVVDDFLSGKMKFLCSFGGKILPRPSDGKLRYVGGETHIISIQKDMAWQELMQKTLGICNQPHTIKYQLPGEDLDALISVSSEEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEETSSTEVNAVQQSDPDYQYVVAVNGMGDSTRTNIGGQNLTNASSQLGADLNFTPVLPKTPNASPDGLFNDSLNVQRPLSIPPAPIPISGSNTGYIQLLGDHSCQGSIESNASYAQLYPECSNISTAGCIYPQHVSDTCPYQHGDVSQPTKLNGGPSKELVTPVYVNPRDEFFGGRSLQRERVFSKTPLSLLDDVICRQGESYGITDSPHGMPHAFSDPQLLRSGAKSGYCSQNGNGQSFSLNLEKGQISSLLIPSVSRVKVTEHPHDSFVHHPQIQSTTPEGESAQAPKRQDLTSSPYYESMGMNNLVHMDNTLAEKKNSIAQTDLGIPSYDAKDVQENSVNLERMKIVEQKNFIPKDSKVQQGKSTAIDKGFVTELHLLNSFPANNLNANINMQKNWDLPFEGIVPIPSDTMDLSLNNFLEKTICDSNMSQRTSEHKINALAKGLNASHKAAQIHPSKNQMDVAFEENPTASYGSLYPAAFCDDLGPSVNMPMNGPDISGTIMSLKKAPPFLDDFITSTGQVVDQFIPKQYASGMSNVEDKVSEQQNFLEGYTDVNQVETFNVTDMTRVVNPYISSDIGSVVSLSHTEVGSIIPGFEPEDFNEDKNEFFSDAMIAEMEASIYGLQIIRNADLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFVGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAEGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDSEWRKLMEECWSPDPESRPSFTEITSRLRSMSLLLQTKGLRPF 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3346g00002 1196 CDD STKc_MAP3K-like 924 1181 - -
Vium3346g00002 1196 Pfam PB1 domain 196 280 IPR000270 GO:0005515
Vium3346g00002 1196 Gene3D Phosphorylase Kinase; domain 1 911 1005 - -
Vium3346g00002 1196 MobiDBLite consensus disorder prediction 553 576 - -
Vium3346g00002 1196 MobiDBLite consensus disorder prediction 1 28 - -
Vium3346g00002 1196 SUPERFAMILY Protein kinase-like (PK-like) 906 1180 IPR011009 -
Vium3346g00002 1196 MobiDBLite consensus disorder prediction 11 28 - -
Vium3346g00002 1196 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1006 1194 - -
Vium3346g00002 1196 CDD PB1_UP2 183 278 - -
Vium3346g00002 1196 ProSitePatterns Protein kinases ATP-binding region signature. 924 949 IPR017441 GO:0005524
Vium3346g00002 1196 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 911 1005 - -
Vium3346g00002 1196 SMART PB1_new 194 281 IPR000270 GO:0005515
Vium3346g00002 1196 Gene3D - 198 280 - -
Vium3346g00002 1196 ProSiteProfiles Protein kinase domain profile. 918 1187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3346g00002 1196 Coils Coil 248 268 - -
Vium3346g00002 1196 PANTHER SERINE-THREONINE PROTEIN KINASE 224 1183 - -
Vium3346g00002 1196 SMART serkin_6 918 1187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3346g00002 1196 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 199 281 - -
Vium3346g00002 1196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1043 1055 IPR008271 GO:0004672|GO:0006468
Vium3346g00002 1196 Gene3D Transferase(Phosphotransferase) domain 1 1006 1191 - -
Vium3346g00002 1196 SUPERFAMILY CAD & PB1 domains 195 285 - -
Vium3346g00002 1196 PRINTS Tyrosine kinase catalytic domain signature 1037 1055 IPR001245 GO:0004672|GO:0006468
Vium3346g00002 1196 PRINTS Tyrosine kinase catalytic domain signature 1000 1013 IPR001245 GO:0004672|GO:0006468
Vium3346g00002 1196 PRINTS Tyrosine kinase catalytic domain signature 1152 1174 IPR001245 GO:0004672|GO:0006468
Vium3346g00002 1196 PRINTS Tyrosine kinase catalytic domain signature 1108 1130 IPR001245 GO:0004672|GO:0006468
Vium3346g00002 1196 MobiDBLite consensus disorder prediction 556 576 - -
Vium3346g00002 1196 Pfam Protein tyrosine and serine/threonine kinase 921 1181 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3346g00002 Vium-Chr3346 21673 43616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3346g00002 176 432 MAP Kinase Kinase Kinase AT1G16270 41.516 7.35e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium3346g00002 PK_Tyr_Ser-Thr 7.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3346g00002 - - pvu:PHAVU_008G122700g 1948.33