Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3343g00003 ATGGCAGGATTGGCTCCAGAGGGTACTCAATTTGATACTCGGCAGTATGATTCTAAGATGAATGAATTGCTTTCTGCCGATGGAGAAGAGTTTTTCACCTCATATGATGAAGTCTATGACAGTTTTGATGCTATGGGTTTACAAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGGATTGTTCCTTTCTGCAAGGGTTTGGACGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCTACATTCTGTTCTGGAATTTTGCAGCAACTAGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTTGCACAGCAGATTGAAAAGGTTATGCGAGCTCTCGGTGATTACCTTGGCGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTCCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTACATACTGTTGTTGGCACTCCTGGCCGTGTGTTTGACATGTTGCGCAGACAGTCTCTTCGCCCTGATCACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTACTGCCTGGTCAAATTCAGGTTGGCGTGTTCTCTGCTACAATGCCACCCGAGGCCCTGGAAATTACGAGAAAGTTCATGAATAGGCCAGTGAGAATCCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTGGAGACATTATGCGACCTTTATGAGACTTTGGCTATAACCCAGAGTGTCATCTTTGTGAACACAGGCGCAAGGTGGACGGGCTCACTGACAAGATGCGAAGCAACGATCACACAGTCTCAGCCACTCATGGAGACATGGACCAAAACACTCGGTGATATCATCATGCGTGATTTCGCTCTGGCTCTTCTCGAGTTCTAA 999 0.4625 MAGLAPEGTQFDTRQYDSKMNELLSADGEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPGQIQVGVFSATMPPEALEITRKFMNRPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTGARWTGSLTRCEATITQSQPLMETWTKTLGDIIMRDFALALLEF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3343g00003 332 PANTHER RNA HELICASE 29 290 - -
Vium3343g00003 332 Gene3D - 249 296 IPR027417 -
Vium3343g00003 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 244 IPR027417 -
Vium3343g00003 332 CDD DEADc_EIF4A 44 242 - -
Vium3343g00003 332 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Vium3343g00003 332 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Vium3343g00003 332 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Vium3343g00003 332 SMART ultradead3 59 256 IPR014001 -
Vium3343g00003 332 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vium3343g00003 332 Gene3D - 30 248 IPR027417 -
Vium3343g00003 332 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3343g00003 Vium-Chr3343 19564 22772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3343g00003 1 325 Eukaryotic Initiation Factors Gene Family AT3G13920 82.622 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3343g00003 K03257 - gmx:100777628 573.163