Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium333g00025 ATGAAGATCCAGTGTGATGTCTGTCACAAAGAAGTCGCCTCCTTCTTCTGCCCTGCAGACGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAGGCTCGCTCACAAACACAAACGCCTCTCTCTCGGCCACCCCACCTCCATAGCCGCCACTCTCTGTGATATCTGTCATGAGAAGCGCGCCTATGTCTTCTGCAGACAAGACAGAGCTCTCCTTTGCAGACAATGTGATGTTTCCATCCATGATGTCAACGAACATACCAAGACGCACGACAGGTTTCTTTTCACTGGAATAACGCTTGAAGAAAAAACCAGAACAACCTCAACCTCGTCAACCTCAAACCCCGCACAAACTTCACTCTCGAACGAGAACATTGATTCTTTTGCTTCTTCTCGCACACTTAATAACTCGAGTTCGGTTCTCACTGGAATAACGCTTGAAGAAAAAACAACCTCAACCTCATCAACCTCGAACGAAAACATCGATCCTTTTGGTTCTTCTCGCACAGTTTATAACTCGAATTCGGTTTCAACAAGTAGCTTATCCGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTTTAGATGCTTCGTTTGCTGCATCAAATGCTTTCTCTAAGGATTATGAGTTTCCGAATGAAGATGTTCAAGTTAGCATGTGCTCCATCCCACTGCAAACTCAATTTAACACTGCTTCGAATGTTTATCCTGAAATGCCAAAAGCTAAAGCCGGTGAAGGATACTCAGATTGGATTCATAATTCTGATTCCGCAGCCTATAAAGTTCCATCGATTACTTCTCCTTTAGTAAAAAAAATTAAACGCTCTCGTTGA 858 0.4441 MKIQCDVCHKEVASFFCPADEAALCHACDRTIHHANRLAHKHKRLSLGHPTSIAATLCDICHEKRAYVFCRQDRALLCRQCDVSIHDVNEHTKTHDRFLFTGITLEEKTRTTSTSSTSNPAQTSLSNENIDSFASSRTLNNSSSVLTGITLEEKTTSTSSTSNENIDPFGSSRTVYNSNSVSTSSLSEYLIQTIPGYCMEDLLDASFAASNAFSKDYEFPNEDVQVSMCSIPLQTQFNTASNVYPEMPKAKAGEGYSDWIHNSDSAAYKVPSITSPLVKKIKRSR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium333g00025 285 CDD Bbox1_BBX-like 5 47 - -
Vium333g00025 285 Gene3D Classic Zinc Finger 1 96 - -
Vium333g00025 285 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium333g00025 285 CDD Bbox1_BBX-like 57 100 - -
Vium333g00025 285 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 247 - -
Vium333g00025 285 MobiDBLite consensus disorder prediction 153 179 - -
Vium333g00025 285 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270
Vium333g00025 285 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Vium333g00025 285 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium333g00025 285 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vium333g00025 285 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium333g00025 Vium-Chr333 176467 177875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium333g00025 1 215 C2C2-CO-like Transcription Factor Family AT1G75540 46.188 5.42e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium333g00025 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium333g00025 - - var:108340015 521.161