Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium333g00010 ATGGAAGTTGCGGCGGCCGAAGCGCTGAAAACGAGCTTGCGGACAGAGTTCATCTTCCCGCAAGCAATCTGCGACGAGATTTTTTGTTTCAACGCCAACAACATTGTAGTCGGCGAAGATTTCTCCGTCGACGACCTTCTTGACTTTTCCAACGGCGAATTCCAGCTTGGAAAGGATTTCGATGTGTACGAGGAAGAGGAAGACGAGGAAAAAGACAGCACCTCCGGTTCCTCGCAGGACCGAACCGAAGACGACAGCAATTCCAATTCCACCGCCGGCGGCGGCGTTGGCGACTCGGACTCCGTCTTCGCCGGGGAATTAACAGTTCCTGCGGATGATGTGGCGGACCTGGAATGGGTTTCTCATTTTGTAGACGATTCTCTCCCTGAGCTTTCTCTTTTGTACCCTGTCCCTTCGGAACAAACAAGGGTATGGGCCGAAGCAAAACCTAGACCGGGACGGGCCCAAAACGGTTCAGCGATTCCCAGAAGGCCGAGAACCGGAAAGAGTAGGAAGCCCAACGCTCGCGTGTGGTCTTTTACGGTGTCGCCGCCGTCTTTGTGTTTTCCGGTGTTGGCTGGCTCCGTTGAGTTTGGCGAGCCGACGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAATTGGGACCCAGTTTCAGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGTCCACTGGGGCCCAAAACACTCTGTAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTACAGACCGGCCTGTAGCCCAACTTTCTCTGGCGATATTCACTCAAATAGCCATCGTAAGGTGTTGGAGATGAGGCGTAGAAAGGAGACCAGCGAACCGCAAACCGGTTCAGACCGGCCTCAACTGGTCCCAAGCTTTTGA 918 0.5501 MEVAAAEALKTSLRTEFIFPQAICDEIFCFNANNIVVGEDFSVDDLLDFSNGEFQLGKDFDVYEEEEDEEKDSTSGSSQDRTEDDSNSNSTAGGGVGDSDSVFAGELTVPADDVADLEWVSHFVDDSLPELSLLYPVPSEQTRVWAEAKPRPGRAQNGSAIPRRPRTGKSRKPNARVWSFTVSPPSLCFPVLAGSVEFGEPTAKKQKKKAEAQIGTQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKETSEPQTGSDRPQLVPSF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium333g00010 305 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Vium333g00010 305 PANTHER GATA TRANSCRIPTION FACTOR 31 294 - -
Vium333g00010 305 Gene3D - 215 292 IPR013088 GO:0006355|GO:0008270
Vium333g00010 305 PIRSF Txn_fac_GATA_plant 3 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vium333g00010 305 FunFam GATA transcription factor 211 297 - -
Vium333g00010 305 SMART GATA_3 216 270 IPR000679 GO:0006355|GO:0043565
Vium333g00010 305 CDD ZnF_GATA 221 278 IPR000679 GO:0006355|GO:0043565
Vium333g00010 305 MobiDBLite consensus disorder prediction 61 103 - -
Vium333g00010 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 277 - -
Vium333g00010 305 MobiDBLite consensus disorder prediction 149 173 - -
Vium333g00010 305 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Vium333g00010 305 MobiDBLite consensus disorder prediction 80 96 - -
Vium333g00010 305 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Vium333g00010 305 MobiDBLite consensus disorder prediction 282 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium333g00010 Vium-Chr333 53809 55476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium333g00010 8 305 C2C2-Gata Transcription Factor Family AT5G66320 38.728 2.99e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium333g00010 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium333g00010 - - gmx:100776188 444.506