Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium333g00001 | ATGCGAACCCTTTGCGACGTATGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCCGACGAGGCTGCTCTCTGCTCTGCTTGTGACCAAAAGATCCATATGTGTAATAAACTTGCTAGCAGACACATTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGGTAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCATGAAAGATATCTTCTATTGAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCACTGGATCAGAATGAATTTAGGAGGGATGAAAATCAGTTTCTCAAGCTAAAAACAAGAGAAATTCAGCAGAATCACAGTATCTTGCCTGTTCCAAGACAAGAAAATAATATCGATGGTCATAGAAAAATTGATAAAAAGTTAATTGATCTGAACACCAGGCCATTGCGGTTAAATGGACCAGCACCAAACAACCAGGAACAAGGTATGGATATTTTAAGAGGCAGTAATCATGAATTTGCAAGTGTGCCACCAGTTGAATCCTACAAACAAGGGGCTGAGAAGTAA | 639 | 0.4335 | MRTLCDVCESAAAILFCAADEAALCSACDQKIHMCNKLASRHIRVGLADPTDVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKPAQMEELGLQPLDQNEFRRDENQFLKLKTREIQQNHSILPVPRQENNIDGHRKIDKKLIDLNTRPLRLNGPAPNNQEQGMDILRGSNHEFASVPPVESYKQGAEK | 212 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium333g00001 | 212 | MobiDBLite | consensus disorder prediction | 192 | 212 | - | - | |
Vium333g00001 | 212 | FunFam | B-box zinc finger protein 19 | 2 | 92 | - | - | |
Vium333g00001 | 212 | Gene3D | Classic Zinc Finger | 2 | 95 | - | - | |
Vium333g00001 | 212 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 96 | IPR000315 | GO:0008270 | |
Vium333g00001 | 212 | CDD | Bbox1_BBX-like | 56 | 96 | - | - | |
Vium333g00001 | 212 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Vium333g00001 | 212 | Pfam | B-box zinc finger | 53 | 92 | IPR000315 | GO:0008270 | |
Vium333g00001 | 212 | Pfam | B-box zinc finger | 3 | 34 | IPR000315 | GO:0008270 | |
Vium333g00001 | 212 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 130 | - | - | |
Vium333g00001 | 212 | SMART | bboxneu5 | 1 | 47 | IPR000315 | GO:0008270 | |
Vium333g00001 | 212 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270 | |
Vium333g00001 | 212 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
Vium333g00001 | 212 | SUPERFAMILY | B-box zinc-binding domain | 50 | 87 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium333g00001 | Vium-Chr333 | 457 | 3087 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium333g00001 | 1 | 196 | C2C2-CO-like Transcription Factor Family | AT2G21320 | 58.163 | 5.37e-79 | 232 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | DBB | Vium333g00001 | zf-B_box | 3.6e-07 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium333g00001 | - | - | gmx:100818604 | 393.275 |