Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium333g00001 ATGCGAACCCTTTGCGACGTATGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCCGACGAGGCTGCTCTCTGCTCTGCTTGTGACCAAAAGATCCATATGTGTAATAAACTTGCTAGCAGACACATTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGGTAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCATGAAAGATATCTTCTATTGAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCACTGGATCAGAATGAATTTAGGAGGGATGAAAATCAGTTTCTCAAGCTAAAAACAAGAGAAATTCAGCAGAATCACAGTATCTTGCCTGTTCCAAGACAAGAAAATAATATCGATGGTCATAGAAAAATTGATAAAAAGTTAATTGATCTGAACACCAGGCCATTGCGGTTAAATGGACCAGCACCAAACAACCAGGAACAAGGTATGGATATTTTAAGAGGCAGTAATCATGAATTTGCAAGTGTGCCACCAGTTGAATCCTACAAACAAGGGGCTGAGAAGTAA 639 0.4335 MRTLCDVCESAAAILFCAADEAALCSACDQKIHMCNKLASRHIRVGLADPTDVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKPAQMEELGLQPLDQNEFRRDENQFLKLKTREIQQNHSILPVPRQENNIDGHRKIDKKLIDLNTRPLRLNGPAPNNQEQGMDILRGSNHEFASVPPVESYKQGAEK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium333g00001 212 MobiDBLite consensus disorder prediction 192 212 - -
Vium333g00001 212 FunFam B-box zinc finger protein 19 2 92 - -
Vium333g00001 212 Gene3D Classic Zinc Finger 2 95 - -
Vium333g00001 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vium333g00001 212 CDD Bbox1_BBX-like 56 96 - -
Vium333g00001 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium333g00001 212 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Vium333g00001 212 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Vium333g00001 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 130 - -
Vium333g00001 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vium333g00001 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vium333g00001 212 CDD Bbox1_BBX-like 4 47 - -
Vium333g00001 212 SUPERFAMILY B-box zinc-binding domain 50 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium333g00001 Vium-Chr333 457 3087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium333g00001 1 196 C2C2-CO-like Transcription Factor Family AT2G21320 58.163 5.37e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium333g00001 zf-B_box 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium333g00001 - - gmx:100818604 393.275