Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3339g00012 ATGACTGAGGCTACACAGTCTAATGCTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCCGCTTCCTGCATGCTGTGTACCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTACACTGAATGTTTTGGGATGAAGCTTTTGAGGAAAAGAGATGTTCCAGAAGAGAAATTTGCCAATGCTTTTCTTGGATATGGCCCTGAACAATCTCACTTTGTTGTGGAATTGACTTATAATTATGGGGTGACCTCATATGATATTGGAACTGGCTTTGGGCATTTTGCTATTTCAACTCCAGATGTTTACAAATTGGTTGAAAACATCCGGGCCAAGGGTGGAAATATCACTAGGGAGCCTGCTCCTGTTACGGGTGGAATATCTGTTATTGCCTTTGTGAAGGACCCTGACGGTTATATTTTTGAGCTCATCCAAAGACCTTCAACCCCTGAGCCATTGTGCCAAGTAATGCTTCGTGTTGGTGATTTAGAGCGCTCAATAAAATTTTATGAAAAGGCTTTAGGTTTGAGGGTCGTGAAGAGGGCTGATAGACCTCAACAAAAGTATACTATAGTCATGCTTGGGTACGCAGACGAGCAAGAGACAACTGTGTTGGAGCTTACGTATAACTATGGTGTTACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATAAGTACGGACGACGTATACAAGAGTGCTGAGGTTGTGAACATAGTCACACAAGAGCTTGGAGGAAAGATTACTCGGGAACCAGGGCCAATTCCTGGACTTAACACAAAGATCACTTCTTTCTTAGACCCTGATGGATGGAAAACTAGCAGGAAGTTTCTCATGTATAAAGAAAGGGTGTTTAACCAAAGAAAAGAAGAATGTAATATACCAATTTGTGACCTAACTGATCATACATACATTTTGTGTTCTGTCAACTGTCATGCTTTTCTGAATAATATTTGA 960 0.4135 MTEATQSNAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKFANAFLGYGPEQSHFVVELTYNYGVTSYDIGTGFGHFAISTPDVYKLVENIRAKGGNITREPAPVTGGISVIAFVKDPDGYIFELIQRPSTPEPLCQVMLRVGDLERSIKFYEKALGLRVVKRADRPQQKYTIVMLGYADEQETTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNIVTQELGGKITREPGPIPGLNTKITSFLDPDGWKTSRKFLMYKERVFNQRKEECNIPICDLTDHTYILCSVNCHAFLNNI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3339g00012 319 Gene3D - 1 147 IPR029068 -
Vium3339g00012 319 Gene3D - 148 275 IPR029068 -
Vium3339g00012 319 PANTHER LACTOYLGLUTATHIONE LYASE 4 275 - -
Vium3339g00012 319 NCBIfam lactoylglutathione lyase 22 146 IPR004361 GO:0004462|GO:0046872
Vium3339g00012 319 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 145 IPR037523 -
Vium3339g00012 319 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 149 IPR029068 -
Vium3339g00012 319 ProSitePatterns Glyoxalase I signature 1. 154 175 IPR018146 GO:0004462|GO:0046872
Vium3339g00012 319 ProSitePatterns Glyoxalase I signature 2. 88 100 IPR018146 GO:0004462|GO:0046872
Vium3339g00012 319 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 23 142 IPR004360 -
Vium3339g00012 319 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 272 IPR004360 -
Vium3339g00012 319 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 151 279 IPR037523 -
Vium3339g00012 319 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 152 273 IPR029068 -
Vium3339g00012 319 CDD GlxI_Ni 23 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3339g00012 Vium-Chr3339 73577 76887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3339g00012 154 272 Calmodulin-binding Proteins AT1G08110 29.861 3.92e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3339g00012 K01759 - gmx:100799447 523.472