Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00058 ATGGAGAACTTGCTGGGTCTGCTGAGAATTCATGTTGAGAAAGGTGTCAATCTGGCAATCAGGGATGTGATGAGCAGTGATCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGCTGAAGACTCGGGTGGTTAAAAAGAATTTAAATCCTGAATGGAATGATGACTTGACCCTGTCTATTTCAGATCCTCATGCTCCAGTCCATTTACATGTGTATGACAAGGACACATTCAGCTTAGATGACAAAATGGGGGATGCTGATTTTTCCATTGGTCCATTCATTGAAGCAGTGAAGATGCGCTTGACAGGTCTCCCCAACAATACCATAGTTACAAAAGTGTTGCCTAGCAGACAAAACTGCTTAGCTGAAGAGAGTCACATTGTGTGGAAGGATGACAAAGTCGTGCAAAACCTGGTTCTTAGACTAAGAAATGTAGAGTGTGGGGAGGTGGAACTCCAGTTGAATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 498 0.4317 MENLLGLLRIHVEKGVNLAIRDVMSSDPYVVIKMGKQKLKTRVVKKNLNPEWNDDLTLSISDPHAPVHLHVYDKDTFSLDDKMGDADFSIGPFIEAVKMRLTGLPNNTIVTKVLPSRQNCLAEESHIVWKDDKVVQNLVLRLRNVECGEVELQLNWIDIPGSRHL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00058 165 SMART C2_3c 7 102 IPR000008 -
Vium3332g00058 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Vium3332g00058 165 CDD C2_ArfGAP 5 148 - -
Vium3332g00058 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vium3332g00058 165 Gene3D C2 domain 3 164 IPR035892 -
Vium3332g00058 165 Pfam C2 domain 6 92 IPR000008 -
Vium3332g00058 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00058 Vium-Chr3332 450526 452793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00058 38 165 C2H2 Transcription Factor Family AT1G70790 55.385 2.74e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00058 - - pvu:PHAVU_001G230800g 309.686