Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00052 ATGAAGAGGAATTTCCGAGACAACTGCGCCGGAGGAGCTGTCAAGGGTGAGTGCTCCTCAATGCCCAACGGCAAGGCCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGAGGAGGGATGGATGAGTTGCTCGCGGCGTTGGGCTACAAGGTTCGTGCTTCCGACATGGCAGACGTCGCACAGAAGCTTGAGCAGTTGGAGATGGTCATGGGGAGTGCCCAGGAAGAGGGAATTTCCCACCTCGCTTCCGACACCGTTCACTACGACCCTACGGATCTCCATTCATGGGTCCAGAGCATGTTGGCCGAACTCAACCCCGAACCCACCAACACCATCCTCGATCCCTCCTCCTTCTTGATCGAAAACCCCTCCCACTCTTCCTCCGTCCTCACCTCCAACTCACGCGTTTTCAACGACGACTCCGAATATGACCTCAGAGCCATTCCTGGAATAGCCGCATACCCTCCTCAAAACACCACAAACAACAACCCCACTGTTCACACCACCACTGCCACAACCACCACCACTGGCACCAAAGCCGTGGAAGAAATCGAAACGACCAGCAACAAGCGCCTCAAGGCTTCCCCAATTGAATCCTCAGAGTCCGCTTCGGAGCCCACGCGCCCTGTAGTCCTCGTTGACTCGCAGGAAGCCGGCGTGCGTTTGGTCCACACTCTCATGGCGTGCGCGGAGGCCGTCCAGCAGGAGAATCTGAAGCTGGCGGACGCACTGGTAAAGCACGTTGGCATACTGGCTTCGTCTCAAGCCGGCGCCATGAGGAAAGTGGCGTCGTACTTCGCCCAGGCCCTGGCGCGTCGAATCTACGGCATCTTCCCGGAGGAAACCCTCGATTCCTCCTTCTCCGACCTTCTCCACATGCACTTCTACGAGTCCTGCCCCTATCTGAAGTTCGCACACTTCACCGCCAACCAGGCCATTCTCGAGGCCTTCACCACCGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAAACAGGGGATGCAGTGGCCCGCCCTCATGCAGGCCCTCGCATTGCGCCCTGGCGGTCCCCCAACTTTCCGCCTAACCGGAATCGGGCCCCCGCAGCCCGACAACACTGACGCGCTGCAGCAAGTGGGCTGGAAGTTGGCCCAGTTAGCCCACACCATCGGCGTCCAGTTCGAATTCCGCGGATTCGTCTGCAGCAGCCTTGCAGATCTCGACCCAAACATGCTAGAGATCCGTCCCGGAGAAGCCGTGGCTGTCAACTCCGTCTTCGAGCTCCATCGCATGCTGGCCCGACCCGGATCCGTCGACAAGGTCATGGACACAGTGAAAAAGCTCAACCCCAAAATCGTAACCATCGTGGAGCAAGAAGCGAACCACAACGGACCGGTTTTCTTGGACCGGTTCACTGAAGCCTTGCATTACTACTCGAGTCTCTTTGACTCGCTGGAGGGTTCTTCCTCCTCCAACGGGTTGGGTTCGCCGAATCAGGATCTGTTGATGTCGGAGTTGTACCTTGGGAAACAGATATGCAACGTGGTGGCGTATGAAGGCGTGGAGCGCGTGGAGCGTCACGAGACTCTGAGTCAGTGGAGGGGAAGAATGGGTTCGGCCGGGTTCGACCCGGTTCATCTCGGGTCTAACGCGTTTAAGCAAGCTAGTATGTTGCTGGCTCTATTCGCAGGCGGTGATGGGTACAGAGTGGAGGAGAATAACGGCTGCCTCATGCTTGGTTGGCACACTAGGCCACTCATCGCCACCTCCGCTTGGAAGCTTCCCGCGCCCGAGTCCTAG 1779 0.5823 MKRNFRDNCAGGAVKGECSSMPNGKAKMWEEDRHQQGGGMDELLAALGYKVRASDMADVAQKLEQLEMVMGSAQEEGISHLASDTVHYDPTDLHSWVQSMLAELNPEPTNTILDPSSFLIENPSHSSSVLTSNSRVFNDDSEYDLRAIPGIAAYPPQNTTNNNPTVHTTTATTTTTGTKAVEEIETTSNKRLKASPIESSESASEPTRPVVLVDSQEAGVRLVHTLMACAEAVQQENLKLADALVKHVGILASSQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDLLHMHFYESCPYLKFAHFTANQAILEAFTTAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAHTIGVQFEFRGFVCSSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVDKVMDTVKKLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSSSNGLGSPNQDLLMSELYLGKQICNVVAYEGVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPAPES 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00052 592 FunFam DELLA protein GAI 39 104 - -
Vium3332g00052 592 ProSiteProfiles GRAS family profile. 213 586 IPR005202 -
Vium3332g00052 592 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 180 582 IPR005202 -
Vium3332g00052 592 SMART DELLA_2 41 114 - -
Vium3332g00052 592 MobiDBLite consensus disorder prediction 190 206 - -
Vium3332g00052 592 MobiDBLite consensus disorder prediction 154 175 - -
Vium3332g00052 592 Pfam Transcriptional regulator DELLA protein N terminal 41 108 IPR021914 -
Vium3332g00052 592 Gene3D - 39 104 IPR038088 -
Vium3332g00052 592 Pfam GRAS domain family 222 586 IPR005202 -
Vium3332g00052 592 MobiDBLite consensus disorder prediction 187 208 - -
Vium3332g00052 592 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00052 Vium-Chr3332 416925 419329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00052 25 587 GRAS Transcription Factor Family AT2G01570 60.997 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium3332g00052 GRAS 1.7e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00052 K14494 - gmx:100799695 944.88