Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00050 ATGGCTTCTGGAGACTTCATTAATAAATCCCTCTCATTTCCTCCATACCCAGAGATGATTTTGGAGGCAGTTGAGGCACTGAATGACGGGAATGGTTCGAATAAAACATCAATTTCGAAGTACATAGAATCTAGGTACGGTGTGTTGCCTCCGGGCCACAAGGTACTGCTGAATGTACACCTTGCAAAAATGAGGGACACTGGGGTGCTTGACTTTTGGAAGAATAACTACACCAAGTGTGACCCAAACGCGCCGCCGCGGCGTGGCCGTGGCAGGCCACCTAAGCCCAAGGAACTTCTGCCTCCGGACACTGTCCTGTCACCGCCCAGGCCCAGGGGCCGCCCCCCAAAGGGCCCAAGTGACATGCAAAGGCCACCCAAAGCCACCGCTGGGAGTGGCAGACCCAGAGGCCGGCCTAGGAAGATGGCGCGGCCAGCCGGAGGATTTGGGGAAGCATCGGCTTCCTCGTTGAAGCCCAGCGCGAGGCCCAGAGGAAGGCCTCCGAAAGTGAAGCCTGGATTGATAGAAAATAATGCTCAGTAG 543 0.5562 MASGDFINKSLSFPPYPEMILEAVEALNDGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDTGVLDFWKNNYTKCDPNAPPRRGRGRPPKPKELLPPDTVLSPPRPRGRPPKGPSDMQRPPKATAGSGRPRGRPRKMARPAGGFGEASASSLKPSARPRGRPPKVKPGLIENNAQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00050 180 MobiDBLite consensus disorder prediction 98 122 - -
Vium3332g00050 180 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium3332g00050 180 MobiDBLite consensus disorder prediction 76 180 - -
Vium3332g00050 180 FunFam HMG-Y-related protein A 8 90 - -
Vium3332g00050 180 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Vium3332g00050 180 Gene3D - 9 84 IPR036388 -
Vium3332g00050 180 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Vium3332g00050 180 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Vium3332g00050 180 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Vium3332g00050 180 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Vium3332g00050 180 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium3332g00050 180 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium3332g00050 180 PANTHER HISTONE H1 14 172 - -
Vium3332g00050 180 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Vium3332g00050 180 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Vium3332g00050 180 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Vium3332g00050 180 PRINTS High mobility group protein (HMGY) signature 122 141 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vium3332g00050 180 PRINTS High mobility group protein (HMGY) signature 109 120 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vium3332g00050 180 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00050 Vium-Chr3332 380931 382042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00050 14 98 Single Myb Histone (SMH) Gene Family AT1G72740 37.647 1.17e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00050 - - gmx:100803968 253.832