Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00049 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGAAGTAACAGAGGAGGTAGAGGTAGAGGAGGACGTGGCAGAGCCCAGTCTGGCCGTGGGCTAAGCGGGTCTCTTAATGGTGGAAGAATGGCCGGTGCTGTTAATGGTAGAAGAATGACTGGTGCTGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCATATGCTATTGCCAAGTCTATTCGCAGAACTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGAATTCAAGGAGTAGAAGTTGGCACCAAGTTATATGTTTCCAACTTGGATCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCGGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTGCTTCTAGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATGCAGAATTGCCCGTAAGTGCTCGGGTGAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGACCAGCTGGAGGTCGTGCTATTCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAGTGGCACAAGGAGTGGCAATGGTCGGGGTAGAGGTGGCGGAGGTCGTGGTCGTGGCAACGGTCGAGGTGGAGGTCGAGGCCGTGGTAGAAAAGACGCCGTTGAGAAGTCAGCAGCAGAACTTGACAAAGAACTGGAGACCTATCACGCTGAGGCCATGAACATCTCTTGA 903 0.4806 MASSLDMSLDDRIKNRSNRGGRGRGGRGRAQSGRGLSGSLNGGRMAGAVNGRRMTGAGNGGRTSGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPVSARVNVTGVNGRRKRTVVMTPRGGPAGGRAIPNRGAGWGRRGGTRSGTRSGNGRGRGGGGRGRGNGRGGGRGRGRKDAVEKSAAELDKELETYHAEAMNIS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00049 300 Coils Coil 275 295 - -
Vium3332g00049 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Vium3332g00049 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Vium3332g00049 300 MobiDBLite consensus disorder prediction 216 286 - -
Vium3332g00049 300 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 297 - -
Vium3332g00049 300 SMART rrm1_1 117 189 IPR000504 GO:0003723
Vium3332g00049 300 MobiDBLite consensus disorder prediction 269 286 - -
Vium3332g00049 300 SMART FoP_duplication_2 227 300 IPR025715 -
Vium3332g00049 300 Gene3D - 111 192 IPR012677 -
Vium3332g00049 300 Pfam C-terminal duplication domain of Friend of PRMT1 239 294 IPR025715 -
Vium3332g00049 300 CDD RRM_THOC4 116 190 - -
Vium3332g00049 300 MobiDBLite consensus disorder prediction 1 72 - -
Vium3332g00049 300 SUPERFAMILY RNA-binding domain, RBD 110 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00049 Vium-Chr3332 366933 372573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00049 115 190 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 3.46e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00049 K12881 - gmx:100820344 431.024