Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00046 ATGTGCATATTCTTAGGAACTCTAAGTCTTCCTCTGTCTCTCTCTCTCTCTCTCTGTGTATATCAATACTCATCTGAAACCTCTGGTTTGAGGGATCAATTGCAGATTCCAGGTACACTTTCTTGGCATTTGAGTTGTGGGGAACACAAAATGGGAAGACAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGCCCATGGACTGCAGAGGAAGATAAGAAACTCATCAACTTCATCCTTACCAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGCTGTTAAGGTGTGGCAAAAGTTGCAGGCTCAGATGGACAAATTACCTAAGGCCAGACCTCAAGAGAGGCCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGGTGGTCTAAGATTGCTTCTCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACCCACAAGTCACTTTCCATTACAACTGAGCAAAGCCAAGCCCAACCAGATAAAAAACCCAATCAGCCATTGCAAGAACCACAAGATCAGCAACAAGCTATCCAAATTGAGGAAGACCCAAAATTTGAGCCTGAAAATGGGCAAAACAAGGAGCCAGAGAAGGCAGAGACTTCATTTGATGTATCAACCATCACCGAAGAAGCTAAGGAGGAAGACCAAATCATGATACCCCTTTTTGAATCGATAATGAATGAGTTATTCACTGATGAAGTTCCCATTATAGAGCCCAGTGAGATATTAGTTCCATCTGCGACTTCCACTTCACCAACCACTACATCATCTTCAACGTCATCGTCTTCATATTCAAATTCCCCCAACTTCTTTGAAGACCTGCAGCTCCCAGATTTTGACTGGTCTGATGATTACAATGATACTAAGATTGACAACAACAATAGCAGTGTGGCCTTGTGGGATGATGACTTGATTAGAAGTTGGAATATGCTTATTAACGATGATGGTGATGGTGACAGAAAGCAAGTGTTTGACACTTCTGCTAATCAGTACCCAAGACTCATCATGGATTCAGAATCTTGGGCATATGGGTTGTTTTGA 1134 0.4206 MCIFLGTLSLPLSLSLSLCVYQYSSETSGLRDQLQIPGTLSWHLSCGEHKMGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSITTEQSQAQPDKKPNQPLQEPQDQQQAIQIEEDPKFEPENGQNKEPEKAETSFDVSTITEEAKEEDQIMIPLFESIMNELFTDEVPIIEPSEILVPSATSTSPTTTSSSTSSSSYSNSPNFFEDLQLPDFDWSDDYNDTKIDNNNSSVALWDDDLIRSWNMLINDDGDGDRKQVFDTSANQYPRLIMDSESWAYGLF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00046 377 MobiDBLite consensus disorder prediction 216 231 - -
Vium3332g00046 377 ProSiteProfiles Myb-like domain profile. 112 162 IPR001005 -
Vium3332g00046 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 111 IPR017930 -
Vium3332g00046 377 Pfam Myb-like DNA-binding domain 121 161 IPR001005 -
Vium3332g00046 377 Pfam Myb-like DNA-binding domain 64 111 IPR001005 -
Vium3332g00046 377 Gene3D - 120 205 - -
Vium3332g00046 377 SMART sant 116 164 IPR001005 -
Vium3332g00046 377 SMART sant 63 113 IPR001005 -
Vium3332g00046 377 MobiDBLite consensus disorder prediction 274 298 - -
Vium3332g00046 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 166 IPR017930 -
Vium3332g00046 377 ProSiteProfiles Myb-like domain profile. 59 111 IPR001005 -
Vium3332g00046 377 CDD SANT 66 111 IPR001005 -
Vium3332g00046 377 MobiDBLite consensus disorder prediction 216 235 - -
Vium3332g00046 377 CDD SANT 124 162 IPR001005 -
Vium3332g00046 377 MobiDBLite consensus disorder prediction 181 206 - -
Vium3332g00046 377 SUPERFAMILY Homeodomain-like 61 158 IPR009057 -
Vium3332g00046 377 Gene3D - 61 117 - -
Vium3332g00046 377 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 51 277 - -
Vium3332g00046 377 FunFam Myb transcription factor 121 183 - -
Vium3332g00046 377 FunFam MYB transcription factor 61 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00046 Vium-Chr3332 328882 331063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00046 51 346 MYB Transcription Factor Family AT1G66230 55.263 1.16e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3332g00046 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00046 K09422 - gmx:100803624 515.383