Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00022 ATGGTGTTGTCTTGGACTAGAAGAAATGTTTTCCGTCGTGCCAAGAAGGAGAAGGGACAGATTCAAGGTGGTGGCCGTGGTGGTGAGTTGGAGGTGGAGGTTGTGATCCCCAACCACTTTCGATGTCCGGTGAGTTTGGAGCTGATGACGGACCCGGTGACTTTATCAACCGGCATCACCTACGACAGGGTGAGCATTGAGAAGTGGATCGAGGGAGGGAACAAGACCTGCCCCGTCACCAACCAGGTGCTCACAAACTTTGACAACATCCCCAACCATGCCATTCGTAGGATGATTCAGGATTGGTGCGTTGAAAACAGCTCTTATGGGATTGAGAGGATCCCCACTCCTCGGATTCCTCTCTCCAGCTACGAGGTTTCTCAGACATGTACCAGGATCTTGTCGGCTTGTCGGCGCGGGGATGATAAAAAGTGCCAGGAGTTGGTTGGGAAGATTAAGGATTGGGGGAGAGATGAGAGGAACAGGAAGTGCATAATTGGGAGTCGTGCTAGAACTGATGCTGGCAATGGTGCCGATGCAGTTCTTGGACATGCCTTCGATTGTTTCTCAAGCGGTGACTCTTTTGACACGCATGTGGTTGTTTTGGAGGAGATTTTGGAGGTGCTGACATGGATGATCCCACTTGGGGAAGAGGGTGTGTCTAAATTGAGTTCAAAAGCTTCATTGAATTGCCTGGTTTGGTTTCTCGAGGGGAAAGACCTTGCATCTAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGCGCATGTTCAAGAATTGGCCAGAGTTGGAAAAGTGGCTGAAGCTTTGGTTAAAATGATTAGGGAGCCTACTGGGAGTGCTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCATCAGCTGAGAACAGAGGGGAAATTACTGAAAGATTTGTGGAGTTGGATTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGATAAAGGGGTGTGCGAGAAGGCACTTGGGATTTTGGATTGCGTTTGTGATATCCAGAAGGGGAAGGAGGTTGTTAAGAACAATGCTCTTACTCTGCCTCTTGTCGTTAAGAAGCTTTTCAGGGTGTCACCATTGGCTTCAAGTTTTGTTGTCTCTATTCTTAAGAAGAATTTTGACAAGAAGGAGGAGGGAGCTCTGATTGAGGCAGTTCAACTAGGGACTTTTCAAAAGCTCTTGGTTTTACTACAGGTTGGTTGTGATGATAGCACAAAGGAGAATGCTACAGAGTTGTTAAAACTGTTGAACAGTTATAGGAACAAAGCGACGTGCACTGACTCATCATCGGATTTCAAGTATCTTAAGAAGTCATTCTGA 1341 0.4683 MVLSWTRRNVFRRAKKEKGQIQGGGRGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQVLTNFDNIPNHAIRRMIQDWCVENSSYGIERIPTPRIPLSSYEVSQTCTRILSACRRGDDKKCQELVGKIKDWGRDERNRKCIIGSRARTDAGNGADAVLGHAFDCFSSGDSFDTHVVVLEEILEVLTWMIPLGEEGVSKLSSKASLNCLVWFLEGKDLASRQSAALLLRQAHVQELARVGKVAEALVKMIREPTGSASTKACLATIFNLVSSAENRGEITERFVELDLVSLLLEAIVDGDKGVCEKALGILDCVCDIQKGKEVVKNNALTLPLVVKKLFRVSPLASSFVVSILKKNFDKKEEGALIEAVQLGTFQKLLVLLQVGCDDSTKENATELLKLLNSYRNKATCTDSSSDFKYLKKSF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00022 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Vium3332g00022 446 SUPERFAMILY ARM repeat 124 427 IPR016024 -
Vium3332g00022 446 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Vium3332g00022 446 SUPERFAMILY RING/U-box 30 112 - -
Vium3332g00022 446 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Vium3332g00022 446 FunFam RING-type E3 ubiquitin transferase 30 112 - -
Vium3332g00022 446 PANTHER WDSAM1 PROTEIN 33 432 IPR045185 GO:0061630
Vium3332g00022 446 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Vium3332g00022 446 Gene3D - 221 433 IPR011989 -
Vium3332g00022 446 CDD RING-Ubox_PUB 37 88 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00022 Vium-Chr3332 145299 146997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00022 28 446 U-box Gene Family AT5G37490 47.307 9.44e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00022 - - var:108327887 848.966