Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00021 ATGAAACAAGACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAACATATCTATTCAAGAAACCTGTGCAGGTCCTTGCAGTGACAACCTCGTCAACTCTCCCCATGTCACAAAACCAATAGAATTTCATCTCTATTCAGATGCTATCTCACTTGACTTAACTCTCAACTTCAACAACAATGACTTGGTGGTTACAGATTCAACAGGACTCTCATTCTCAAGCACTACTAGCGAGAGCAACAACGATCCTCCCTCTCAGAGTACTCCCTCTCAAACCATGCCACGGGTCTTCTCTTGCAATTACTGTAACCGCAAGTTTTTGAGCTCTCAGGCTCTTGGAGGCCACCAAAATGCACACAAGAGAGAAAGAACATTAGCAAAGAGAGCCTTGCGCATGGGTTTTTTCTCTGAGAGGTATGTCAGTCTTGCATCTCTCCCTCTTCATGGTTCTTTCAGGTCCTTAGGGATAAAGGCACATTCTTCACTTCACCAAGGCTTTTCACCAACAATGAGACCTCCCGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTTTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTAATGGAGGCCATACTCATCAGAATTTCACACTGAGTGGAACCTCTAATTTGAGTTTTAATGGGGTGAATCATCCACCGGTTGACATAGAGAACTCAGCACCTGAGTTGACATTGAAACTTTGA 786 0.4415 MKQDFDLEVVASAEYESEVSSQVASNISIQETCAGPCSDNLVNSPHVTKPIEFHLYSDAISLDLTLNFNNNDLVVTDSTGLSFSSTTSESNNDPPSQSTPSQTMPRVFSCNYCNRKFLSSQALGGHQNAHKRERTLAKRALRMGFFSERYVSLASLPLHGSFRSLGIKAHSSLHQGFSPTMRPPEMKSSARFEQGYVGFPIFLEEDEAELLWQGSYHQVPSNGGHTHQNFTLSGTSNLSFNGVNHPPVDIENSAPELTLKL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00021 261 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 57 194 IPR044246 GO:0009788
Vium3332g00021 261 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Vium3332g00021 261 MobiDBLite consensus disorder prediction 83 103 - -
Vium3332g00021 261 Gene3D Classic Zinc Finger 84 149 - -
Vium3332g00021 261 SUPERFAMILY beta-beta-alpha zinc fingers 106 135 IPR036236 -
Vium3332g00021 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00021 Vium-Chr3332 137506 139519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00021 106 261 C2H2 Transcription Factor Family AT1G66140 50.829 1.66e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00021 - - gmx:100815175 385.956