Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3332g00011 ATGCCCTTGGAAGGGATTTTCATTGAACCTACTTCAACTTCTACACCTGATCTTTCCCTTCACATAAGTCCACCAAGCACTTCCTCTTCTTCTTCTTTGATTTGCAACAACGGCACATCTGCTGGTGCCACCAATTATGAGGCTCGCAATTCAACCGGCACAAATTTCCCTTCTCAAGCTCACACTGAGCTTTCTTTGGGAAGGAATTTCAGTGGTGGAGGAAGAGGGGGTATTGAAGAACCACCACCACACAACACCAACAGCAGCATCAACCCTTATTATCAGACCCAACAGCCTCGTTTCCATCATCTTCACCATCATTCTAACACTGGGAATGTTTCAAAAGCAGCAACAGCGACGAGCACCACAAGTTCCTCCAATCACTTGAGTCACATAAATTATGGGGTTTCTTTGCTTGATGTGTCATCAGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCGTTCCCTTTCTTGCCCATGGAACATTCAGGAGACAAGGATCATCACGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCTCTTTGTCCTCTTCTTGTTCTCCTCTGTGTTCTTCTTCTTCTTCTTTTACTTCTTCTCCTGCACCCTACTTTGCCGCAGCGGCAGGTGCTCCGGATCCCATGTCCTATTTGAGCTCAGGTGGGACCACCGTTGCGGCGGCCGCGGCTTATAGGGCTGCCACGGCCACAAGGTTTAATGGAATTTCTGGAGAGGCCTTCAAAACTCATCATCCATTGCACCACCATCACTCGTCGTCACACTACGGGGTTGGACTCGGAGGGTCTCATGAGGCCTCTTCGGGGTTGATGAGATCAAGGTTTTTGCCCAAGTTGCCAACAAAGAGAAGCATGAGAGCACCGAGAATGCGGTGGACAAGTACACTACACGCTCGATTCGTCCATGCTGTGGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTAGAGCTCATGGATGTGAAGGATCTCACGTTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTAAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCAGGAGAAGATGACATGTCTCCAATGGGAAGCAGCGGTGGTATGCGTCAATTTTCAGACCAAAGAAGCCTTTCAGATCGACCTGTGCAACAAGACATGGATTACTCTTCGGCCAATACTCTATGGAGTAACTCTTCAAGCAATAGAGAACCATGGCAACAAAACAGTTCTAACGACATAAATGGTTTCCGACCACCGATCTTCCAGTCACAACAGATATCAGGAGGACATCAAATTCAGGATTGTGATTCAAGCAAACTGAAGAACAGCTTGTCAGGATCAGCAAATTTAGAATGCAAGAACCCAAGCTTGGAGTTCACGTTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1467 0.4717 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNGTSAGATNYEARNSTGTNFPSQAHTELSLGRNFSGGGRGGIEEPPPHNTNSSINPYYQTQQPRFHHLHHHSNTGNVSKAATATSTTSSSNHLSHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPMEHSGDKDHHAKMCLYHHMPTYPSLSSSCSPLCSSSSSFTSSPAPYFAAAAGAPDPMSYLSSGGTTVAAAAAYRAATATRFNGISGEAFKTHHPLHHHHSSSHYGVGLGGSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRSLSDRPVQQDMDYSSANTLWSNSSSNREPWQQNSSNDINGFRPPIFQSQQISGGHQIQDCDSSKLKNSLSGSANLECKNPSLEFTLGRPDWNGKGQA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3332g00011 488 MobiDBLite consensus disorder prediction 355 460 - -
Vium3332g00011 488 MobiDBLite consensus disorder prediction 1 127 - -
Vium3332g00011 488 SUPERFAMILY Homeodomain-like 297 353 IPR009057 -
Vium3332g00011 488 Gene3D - 299 356 - -
Vium3332g00011 488 MobiDBLite consensus disorder prediction 110 127 - -
Vium3332g00011 488 FunFam Myb family transcription factor 298 356 - -
Vium3332g00011 488 MobiDBLite consensus disorder prediction 381 460 - -
Vium3332g00011 488 MobiDBLite consensus disorder prediction 82 98 - -
Vium3332g00011 488 NCBIfam myb-like DNA-binding domain, SHAQKYF class 300 353 IPR006447 GO:0003677
Vium3332g00011 488 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 485 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vium3332g00011 488 MobiDBLite consensus disorder prediction 8 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3332g00011 Vium-Chr3332 99999 106189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3332g00011 147 485 G2-like Transcription Factor Family AT5G16560 45.278 1.76e-77 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3332g00011 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3332g00011 - - ccaj:109796302 684.1