Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3331g00005 ATGTCCTCCTCAAGGCCTAGTCAATCGTCCAGCAATAATTCTGGCAGATCAAGATCATCAAGACGCAGTGCTAGGGTTCTTGCTCAGACAACTTTAGACGCAAAACTGCATGCAACTTTCGAGGAATCCGGTAGTTCTTTTAACTACTCCAATTCAGTGAGATTGTCCCCTGGCACAGGCACTGCCAGTGGTGATCATCAACCAAGGTCTGATGAAGTAACAACTGCTTACCTCCATCAGTTACAGAAAAGCAAGCTTATCCAACCATTTGGGTGCTTGCTAGCGTTAGATGAGAAAACATTTAGGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTAACCATGGTTAGCCAGGCTGTCCCCAGTGTTGGTGACCACCCTGCTCTGGGAATTGGCACTGACATCAGAACTATTTTCACTTCCCCGAGTTCTACTTCTATTCAGAAGGCACTGGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTTCATTGCAAGTCCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGCAGTGTGATCATTGATTTTGAGCCAGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCCTGCAGTCCTATAAATTTGCAGCAAAAGCAATAACTAGATTGCAATCGTTGCCTAGTGGGAACATGGACACTCTGTGTGACACAATGGTTCGAGAGGTTTTTGAACTAACAGGTTATGATAGAGTGATGGCTTATAAATTTCATGAGGATGATCACGGGGAAGTGATTGCTGAAGTGAAAAGGCCAGACCTAGAGCCGTATCTGGGATTGCACTACCCAGCAACTGATATTCCTCAGGCTACACGTTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGTCGTGCAAAGCATGTGAAGGTGCTTCAAGACAAAAAAATTCCATTTGAATTAACTCTGTGTGGATCAACCTTGAGGGCTGCTCACAGTTGTCACTTGCAATACATGCAAAATATGAATTCTAGTGCTTCCTTGGTTATGGCCGTTGTGGTCAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGATTATGGGGTTTAGTAGTTTGCCATCACTCCACTCCCAGGTTTGTTCCTTTCCCTCTCAGGTATGCTTGCGAATTCCTGGCTCAGGTATTTGCCATCCATGTGAACAAAGAACTTGAGATAGAGTATCAGATTATTGAGAAGAATATCCTGAGGACTCAAACACTCTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAGAGTCCTAACATTATGGACCTTGTTAAGTGCGATGGTGCAGCACTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTGTGGCTCTCTGAATGTCACAGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCAGGGGCTGCTACTCTTGGTGATATAACTTGTGGAATGGCAGCTGTCAGAATATCTTCCAAAGAAATAGTTTTCTGGTTCCGATCTCACACAGCCGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTAGCAGGATGCATCCAAGATCTTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGTTTGCCCTGGAAGGATTATGAAATGGACGTCATTCATTCATTGCAACTAATACTGAGAAATGCATTCAAAGACAACGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGATTAGGCGATTTGAAAATTGAAGGGATGCAAGAACTGGAAGCAGTGACTAGTGAGATGGTAAGGTTAATTGAAACAGCAACAGTACCAATTTTGGCTGTTGATGTCAATGGAATGGTCAACGGGTGGAATACAAAAATTGCTGAGTTGACATGTCTTCCAGTTGAACAAGCTATTGGGAAGCATTTACTCACTCTTGTTGAAGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAGGAAGAGAAAAGTGTGCAATTTGAGATAAAAACACACGATTTGAAGATTGATTCTGGTCCTATCAGCTTGGTGGTCAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTGATGGACAAATTCACCCGAATTGAAGGCGACTACAAGGCAATTGTGCAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGGTGGTGTTCTGAATGGAATTCAGCTATGACAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGGGAGGTTTTTGGTACACATATAGCTTGTTGTCGTCTAAGGAATCAGGAAGCTGTTGTTAACTTCAGCATTGTACTTAACAAAGCCATGGCTGGTTTGGAAACGGAGAAGATTCCTTTTAGTTTCATTACTCGTGATGGGAAACACGTAGAATGTCTGCTTTCTGTGAGTAAGAAGTTGGATGCAGAGGGTGTAGTTACTGGAGTCTTCTGCTTCTTGCAACTAGCTAGTCCAGAGCTTCAACAAGCATTACACATTCAGCACCTATCTGAACAAACTGCATCCAAAAGACTGAAAGCTTTAACTTATTTGAAAAGGCAAATTCGGAGTCCTTTATACGGGATTGTTTTCACCCGGAAATTGTTAGAAGGTACTCAGTTGGGACCTGAACAAATACAATTTCTGCAAACGGGTACTCGGTGTCAACGCCAACTTAGCAAAGTCCTGGATGACTCAGATCTTGACAGCATCATTGATGGGTATCTGGATTTGGAGATGCTTGAATTTACTCTGCATGAAGTGTTAGTTGCCTCCTTAAGTCAAGCCATGACAAAAGGTAATGCAAAAGGTGTCCGAGTGGTCAATGATGTTGAAGAGCAGATCACAACAGAAACCTTATACGGTGATGGTCTCAGGCTCCAGCAGGTCTTAGCCGACTTTTTATTGGTTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGTTGTGGCAGCCTCATTAGCAAAACAGCAGTTAGGGAAACTAGTTCATCTTGCTAATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTTCCAGAAACACTGCTGAACCAAATGTTTGGACGTGATGGTGATGAATCTGAGGAAGGTATCAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTGATGAATGGAGAAGTACGTTATATAAGGGAAGCAGGCAATTCATCTTTCATCTTATCTGTTGAACTTGCCGCAGCTAATAAATCCAACACTTAA 3396 0.4314 MSSSRPSQSSSNNSGRSRSSRRSARVLAQTTLDAKLHATFEESGSSFNYSNSVRLSPGTGTASGDHQPRSDEVTTAYLHQLQKSKLIQPFGCLLALDEKTFRVIAYSENAPEMLTMVSQAVPSVGDHPALGIGTDIRTIFTSPSSTSIQKALGFGEVSLLNPILVHCKSSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKFAAKAITRLQSLPSGNMDTLCDTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPDLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKHVKVLQDKKIPFELTLCGSTLRAAHSCHLQYMQNMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHSTPRFVPFPLRYACEFLAQVFAIHVNKELEIEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSECHRDSTGLSTDSLSDAGFPGAATLGDITCGMAAVRISSKEIVFWFRSHTAAEIRWGGAKHEPGERDDGSRMHPRSSFKAFLEVVKTRSLPWKDYEMDVIHSLQLILRNAFKDNESMEISTYAINTRLGDLKIEGMQELEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELTCLPVEQAIGKHLLTLVEDFSVDRVKKMLDMALQGEEEKSVQFEIKTHDLKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNSAMTKLTGWKREEVMDKMLLGEVFGTHIACCRLRNQEAVVNFSIVLNKAMAGLETEKIPFSFITRDGKHVECLLSVSKKLDAEGVVTGVFCFLQLASPELQQALHIQHLSEQTASKRLKALTYLKRQIRSPLYGIVFTRKLLEGTQLGPEQIQFLQTGTRCQRQLSKVLDDSDLDSIIDGYLDLEMLEFTLHEVLVASLSQAMTKGNAKGVRVVNDVEEQITTETLYGDGLRLQQVLADFLLVSINFTPTGGQVVVAASLAKQQLGKLVHLANLELSITHDGFGVPETLLNQMFGRDGDESEEGISMLISRKLLKLMNGEVRYIREAGNSSFILSVELAAANKSNT 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3331g00005 1131 SMART gaf_1 225 418 IPR003018 GO:0005515
Vium3331g00005 1131 SMART HKATPase_4 1013 1125 IPR003594 -
Vium3331g00005 1131 Gene3D PAS domain 81 328 - -
Vium3331g00005 1131 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Vium3331g00005 1131 Pfam PAS fold 76 192 IPR013654 GO:0006355
Vium3331g00005 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 630 737 IPR035965 -
Vium3331g00005 1131 Gene3D - 206 569 IPR029016 -
Vium3331g00005 1131 ProSiteProfiles Histidine kinase domain profile. 908 1125 IPR005467 -
Vium3331g00005 1131 Pfam Phytochrome region 421 596 IPR013515 GO:0006355|GO:0009584
Vium3331g00005 1131 NCBIfam PAS domain S-box protein 631 747 IPR000014 -
Vium3331g00005 1131 CDD PAS 635 741 IPR000014 -
Vium3331g00005 1131 CDD PAS 768 879 IPR000014 -
Vium3331g00005 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 398 IPR016132 -
Vium3331g00005 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 194 IPR035965 -
Vium3331g00005 1131 Coils Coil 405 425 - -
Vium3331g00005 1131 ProSiteProfiles PAS repeat profile. 624 694 IPR000014 -
Vium3331g00005 1131 SMART pas_2 756 825 IPR000014 -
Vium3331g00005 1131 SMART pas_2 626 692 IPR000014 -
Vium3331g00005 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1118 IPR036890 -
Vium3331g00005 1131 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 627 643 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 646 661 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Vium3331g00005 1131 SUPERFAMILY GAF domain-like 416 594 - -
Vium3331g00005 1131 MobiDBLite consensus disorder prediction 45 69 - -
Vium3331g00005 1131 Gene3D - 940 1118 IPR036890 -
Vium3331g00005 1131 SMART HisKA_10 901 966 IPR003661 GO:0000155|GO:0007165
Vium3331g00005 1131 Gene3D - 413 586 IPR043150 -
Vium3331g00005 1131 Gene3D PAS domain 618 755 - -
Vium3331g00005 1131 PANTHER TWO-COMPONENT HISTIDINE KINASE 913 1118 - -
Vium3331g00005 1131 SUPERFAMILY GAF domain-like 205 405 - -
Vium3331g00005 1131 FunFam Phytochrome 413 544 - -
Vium3331g00005 1131 Pfam GAF domain 225 408 IPR003018 GO:0005515
Vium3331g00005 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1013 1123 IPR003594 -
Vium3331g00005 1131 Pfam PAS fold 757 879 IPR013767 GO:0006355
Vium3331g00005 1131 Pfam PAS fold 627 741 IPR013767 GO:0006355
Vium3331g00005 1131 PIRSF Phytochrome_conventional 1 1131 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vium3331g00005 1131 MobiDBLite consensus disorder prediction 1 26 - -
Vium3331g00005 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 877 IPR035965 -
Vium3331g00005 1131 Gene3D PAS domain 770 882 - -
Vium3331g00005 1131 FunFam Phytochrome 620 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3331g00005 Vium-Chr3331 32507 37888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3331g00005 1 1128 Histidine Kinase Gene Family AT1G09570 75.996 0.0 1808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3331g00005 K12120 - gmx:100791098 1962.96