Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3330g00001 ATGTCGAAAACGAAGTCAAGTAAAAAAGACTTGAACTCCTACACCATCAAAGGTACCAACAAGATCGTAAGAGTTGGGGACCATGTGACGATGCGCCCTCCTGATACGAACAAGGCACCATACGTGGCTCGTGTTGAGAAAATTGAACCTTGTCGTAAGAACGATGTGAAGGTGCATGTTAGGTGGTACTATAGGCCTGAAGATTCCATTGAGGGACGTAGGAGATTCCATGGGGTGAAAGAGTTATTTTTGTCTGACCATTATGATGTTCAAAGTGCTCATGCCATTGAAGGGAAGTGCGTTGTGCACTCTTTCAAGAACTATACCAAGCTTCAGGATGTAGCTGCTGAGGATTATTATTATAGGTTTGAGTACGAGGCTGCTACTGGAACTTTCACACCTGATCGTGTAGTTGTGTACTGCAAGTGCGAGATGCCTTATAACCCAGATGTACTTATGGTGCAGTGTGAGGAATGCAAGAATTGGTACCATCCTGCTTGTGTGGACATGACTGCTGAAGATGCAGAAAAGTTGGAGCAATATGTTTGCTCAGAATGTTCATTTGTTGATGAAATGAAGAAATCTCAAGCTAAAGTTGCTCTATCACCAAAAACTGATAGCGAGATTATTGAGCCCAAGCGACAAAGAATATAA 654 0.4266 MSKTKSSKKDLNSYTIKGTNKIVRVGDHVTMRPPDTNKAPYVARVEKIEPCRKNDVKVHVRWYYRPEDSIEGRRRFHGVKELFLSDHYDVQSAHAIEGKCVVHSFKNYTKLQDVAAEDYYYRFEYEAATGTFTPDRVVVYCKCEMPYNPDVLMVQCEECKNWYHPACVDMTAEDAEKLEQYVCSECSFVDEMKKSQAKVALSPKTDSEIIEPKRQRI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3330g00001 217 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Vium3330g00001 217 SMART PHD_3 140 187 IPR001965 -
Vium3330g00001 217 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Vium3330g00001 217 SMART BAH_4 21 136 IPR001025 GO:0003682
Vium3330g00001 217 Pfam PHD-finger 140 187 IPR019787 -
Vium3330g00001 217 Pfam BAH domain 23 135 IPR001025 GO:0003682
Vium3330g00001 217 SUPERFAMILY FYVE/PHD zinc finger 132 191 IPR011011 -
Vium3330g00001 217 PANTHER OS08G0421900 PROTEIN 1 207 - -
Vium3330g00001 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 202 IPR013083 -
Vium3330g00001 217 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Vium3330g00001 217 Gene3D - 1 132 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3330g00001 Vium-Chr3330 6740 9459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3330g00001 30 132 Core DNA Replication Machinery Family AT4G14700 25.000 6.02e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium3330g00001 BAH 6.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3330g00001 K25868 - mnt:21397306 339.732