Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3325g00001 ATGGATATTGAGACACTGTTCAAAGAAACCTTTGTCCCACAGCCCTTGCAAGAAAGCTGTCTGAAAGATATGATTCCTTTGGGAAATCCTTTATCGCAAGAATGCTTGCAAGATTTTCACCATATTGATCAGTTTCACTTCAATGTGCCCTCATCCAATAATTCAATAATCCAGAACCCAACTTTTGATGCTTTTGAAAATTTCACCTTTACAGGTTCATCACCTGCTTTAGATGTATACGAGAGCAAGCCTTTTGTGGAGAATAGGCATACTCATGTCATGGACAATTTCCTTTATGGAAATCATAACTTGATTCTCCCTCAAAGGAATGTTGAACTAGATCTGATGGTTGCAGATCAAAGCTTTTTGCCTTTTAGTCCTCAAGAAATCAAACCCTCCAATTTTTCTTTGCCAGATGAAGTTTCATGCATATCCCCCATGAATTATTACAAAAGAATTGGCCTTAACAAAAATAATAAATCCTATCCAACCACTCGAAGAACGTCCAAAGTTCGCAAGAAGTCCAACACAGTAAAGGGGCATTGGACAATAGAAGAAGATGGATTATTGATTCAACTGGTGGAACAATACGGTTTGAGGAAGTGGTCTCATATAGCTAAGATACTGCCTGGAAGAATTGGCAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGATATTAAGAAGGACACATGGAACTGTGAAGATGATAAAATACTAATAGAAGCTCATGCTGAGGTAGGAAACAAATGGGCAGAGATTGCTAAAAGGTTGCCTGGAAGAACTGAGAACTCGATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGCAGATCCAAGTACCCCAGAGGCACTCTTCTACAAGAGTATATCAAGAGCTTGAACTTAGACAAGAATCCCCCAATAGATTATAGGAGAAAATCTTCTGCTAACCATGCTATCAAAACCAGCACAAGCAAATCCACTGCACCAGCTTTGCCCCAGACAGCTTCTCAATTTTCTGCCATTGAATTGCCACCAGATTCTGATTTCAATGTGGTCCCAGATTTTCTCTTTGGTGAGAATCTCTTGGAAGAAGATTGCAGTATTCATTCCCTTCTAGATGGTGTGCCTTGTGTTCCTTTCATGGATAACAAAAATTGTGAAGGAACATTGCAATGTGATCCTATGATGGAGGGAATGCAGCATTTCGAATATGTAGGAATAGAGTGTTTTGCAGCTATTAATGGAGATGAGAATCATGTTGAGACAGATATGCAACCAGTGATGTTGGAAGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATCTCTCAGATTAATAGTGAAACTTTTCATGTTTAA 1371 0.3924 MDIETLFKETFVPQPLQESCLKDMIPLGNPLSQECLQDFHHIDQFHFNVPSSNNSIIQNPTFDAFENFTFTGSSPALDVYESKPFVENRHTHVMDNFLYGNHNLILPQRNVELDLMVADQSFLPFSPQEIKPSNFSLPDEVSCISPMNYYKRIGLNKNNKSYPTTRRTSKVRKKSNTVKGHWTIEEDGLLIQLVEQYGLRKWSHIAKILPGRIGKQCRERWHNHLRPDIKKDTWNCEDDKILIEAHAEVGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPIDYRRKSSANHAIKTSTSKSTAPALPQTASQFSAIELPPDSDFNVVPDFLFGENLLEEDCSIHSLLDGVPCVPFMDNKNCEGTLQCDPMMEGMQHFEYVGIECFAAINGDENHVETDMQPVMLEVEVKKELDLVEMISQINSETFHV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3325g00001 456 CDD SANT 182 225 IPR001005 -
Vium3325g00001 456 Gene3D - 178 230 - -
Vium3325g00001 456 ProSiteProfiles Myb-like domain profile. 226 276 IPR001005 -
Vium3325g00001 456 FunFam Transcription factor MYB119 232 296 - -
Vium3325g00001 456 SMART sant 230 278 IPR001005 -
Vium3325g00001 456 SMART sant 178 227 IPR001005 -
Vium3325g00001 456 ProSiteProfiles Myb-like domain profile. 174 225 IPR001005 -
Vium3325g00001 456 Gene3D - 233 293 - -
Vium3325g00001 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 280 IPR017930 -
Vium3325g00001 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 229 IPR017930 -
Vium3325g00001 456 FunFam Transcriptional activator Myb isoform A 178 231 - -
Vium3325g00001 456 Pfam Myb-like DNA-binding domain 182 235 - -
Vium3325g00001 456 SUPERFAMILY Homeodomain-like 177 272 IPR009057 -
Vium3325g00001 456 PANTHER MYB PROTEIN-RELATED 163 325 - -
Vium3325g00001 456 CDD SANT 233 276 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3325g00001 Vium-Chr3325 3784 5958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3325g00001 77 379 MYB Transcription Factor Family AT4G18770 50.904 2.02e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3325g00001 Myb_DNA-bind_6 7.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3325g00001 K09422 - gmx:102662267 647.891