Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3315g00006 ATGGCTCAAGAGGGAGGAAATGAAGCCATACCAAAATTCAAAGAGAGAAGCCCAATCCCAAAAGATTTCGATGACAAGAGTTTTGATGAAAAGAGTTACAGCATCAGCGGAAAAATCATGCTTTCTGCCATCGTTCTACTCTTCTTCATCGTCATTTTAATGCTCTGTCTCCACATCTACGCCCGCTGGTACCTCAGACGCGCGCGCCGCCGTCAGCTCCACCGCCACCGCGAGCTCCGCCGAACACAACTCGTCTTCTACAACGACGCCGGCACCCCCGCCGCGGTCTCCCGCGGCCTCGACGCTGCCGTCCTCGCCTCTCTACCTGTGTTCACGTACGACCCCAAGGCACACCCGGAAAACGCGCCCGAATGCGCGGTTTGTTTGTCTGAGTTCGAACTGGGAGAACCGGGTCGGGTCTTACCGAAGTGTAACCACAGCTTCCACACAGACTGCATCGATATGTGGTTTCACTCGCACGCAACGTGTCCGCTTTGTCGCGCGCCGGTCGAGCGCGCGGCCGAACCGGAGACTGTTATAACTGTTAGCGAACCGGAATCCGGTTCGGGAGAGAACCTAACCGGTTCTACCTCTTGTCCTTCCTCTTCGGTTGGCTCTAGGAAATCGTCGTTGGTTGGTGTGACCGTTGAGGTGCCTCCGCGGGACGAGAATTTTCGAGACGAGAATACGTCGTCGTTTCGGTCGCCGATGAGTCGCATGTTATCGTTTACGAGGATTCTTAGCAGAGAACGGAGGGGAAACACGTCCCCGTCGTCTAGCGGCGGTGATTGTAGCTCCGCCGCCCAGTGCGAGGCCGAGCGAGGTGAGCGAGAGGAGACCCAGTGA 846 0.5674 MAQEGGNEAIPKFKERSPIPKDFDDKSFDEKSYSISGKIMLSAIVLLFFIVILMLCLHIYARWYLRRARRRQLHRHRELRRTQLVFYNDAGTPAAVSRGLDAAVLASLPVFTYDPKAHPENAPECAVCLSEFELGEPGRVLPKCNHSFHTDCIDMWFHSHATCPLCRAPVERAAEPETVITVSEPESGSGENLTGSTSCPSSSVGSRKSSLVGVTVEVPPRDENFRDENTSSFRSPMSRMLSFTRILSRERRGNTSPSSSGGDCSSAAQCEAERGEREETQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3315g00006 281 CDD RING-H2_EL5-like 124 167 - -
Vium3315g00006 281 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Vium3315g00006 281 MobiDBLite consensus disorder prediction 9 23 - -
Vium3315g00006 281 MobiDBLite consensus disorder prediction 244 281 - -
Vium3315g00006 281 FunFam E3 ubiquitin-protein ligase ATL6 89 173 - -
Vium3315g00006 281 Pfam Ring finger domain 124 167 IPR001841 -
Vium3315g00006 281 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 30 173 IPR044675 -
Vium3315g00006 281 MobiDBLite consensus disorder prediction 181 212 - -
Vium3315g00006 281 SMART ring_2 125 166 IPR001841 -
Vium3315g00006 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 175 IPR013083 -
Vium3315g00006 281 MobiDBLite consensus disorder prediction 182 210 - -
Vium3315g00006 281 MobiDBLite consensus disorder prediction 1 23 - -
Vium3315g00006 281 SUPERFAMILY RING/U-box 105 172 - -
Vium3315g00006 281 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3315g00006 Vium-Chr3315 30069 31394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3315g00006 14 278 Rapid Response to Elicitors AT3G16720 49.153 1.09e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3315g00006 - - gmx:100791545 330.102