Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3315g00003 ATGGGTGAAGGTAGGAATCGCAACCCAAACAAAAGATTCGCCATTCTTGGCGTGTCTTCGATCCTCCTTGTGGCTGTGGTGGCTGTGATAGCTGTTACTTTAAACCAAGGAGATGTACCTGAAGAAGAAGCAGCTCGTATCGCTAGTTCTCAAAAGACAAGTGTAGACATACTTTGCCATTCAACAGAATACGCGAAAACCTGCAAGAAAAGCCTTAAAAATGTAGCTGCTAACGGAACCGCAGACACAAAGACTCTGGTGAAAGCTGCGATCAATGCCACAGCGGTGGAACTTTTGAGCCACATAAGGAACTCATCCCTTTATAAAGACTTGGGGAAGGACAACATGACAAGACAAGCCATGGATATTTGTAGGGAAGTGTTTCAGTATGCTGTTAATGGCATTCAGAAATCTGCTGATACAATAGACAAGTTTGAATATGGGAAGTTGAGTGAATATATTTATGACCTAAGGGTTTGGGTCGCGGGGAGTCTCACTCACCAGCACACGTGCTTGGAAGGCTTTGTGAACACGAGCACGAAGGCTGGTGAGACAATGACTAAGGTTTTGAATACCTCTATGGAGCTTAGCAGCAATGCGTTGGATATGTTGAATGTGATCTCTGGACTGATGAAGGACCTTAACTTGACCTCATTTGGCAATAGGAGGCTTCTCTCTGAGGACACACCAACCTTGAATGATTATCCTCCGTGGGTGACTCAAGAAAAACGGCGTCTTCTTGAGATGGGAACTGAAAATCCTGATGCAGTTGTGTCCCAAGATGGCTCTGGCCAATTTAAATCTATCAATGAAGCTCTTCAGTCCGTTCCTGCTAACAATGAAAAACCTTTTGTGATTTACGTCAAAGAAGGTGTGTACAGGGAAAACGTTGAAATGTCTGTACTAATGACTCATGTCACTATCGTCGGAGATGGTCCAACAAAGACCAGATTCAGTGGTAGTTTAAACTACGATGATGGCGTCCAAACCTACAAAACTGCAACTTTTGCGGTTAATGCTCCAAACTTCATGGCGAAGGATGTCGGATTTGAGAACACGGCAGGGTCTGAGAAACATCAAGCAGTGGCACTGCGAGTGACAGCAGACCAAGCTGTGTTTCTGAATTGCCACATGGACGGGTTCCAAGACACCCTATATGCTCAGTCACAACGCCAATTCTACCGTGATTGCTCCGTGACTGGGACGGTTGATTTTGTGTTTGGAGATGCCGTTGGAGTGTTCCAAAACTGCACGCTGATTGTGAAAAAACCGTTGGGCAAACAACGGTGCATGGTGACAGCTGGTGGGAGAGTGAAATCCGACAGCCCCACTGCCCTAGTTTTCCAAGGTTGTCTGTTCACTGGAGAGCCGGAAGTGTTTAGCATGCCACAAAAGGTAACATACCTAGGAAGGCCATGGAGGGCATACTCTAAGGTAATCATCATGGACTCCCAACTTGACGACATCTTCATACCAGAAGGGTACATGGGGTGGATGGGAACTGAATTCATGGACACTTGTACATATTTAGAGTACAATAACAGAGGCACTAATGCTGACACTTCACTCAGAGTCAAATGGCCTGGTGTTAGGAGTCTAACAGCAGAAGAAGCAGCTGATTATTATCCTTCCAGGTTCTTTGAACTTTATTCTCCAAATGATGGTGATTGGATTGTTAGATCTAGGGCACCCTACAGTCTTGGCCCTTCTCCCCAGTAG 1719 0.4555 MGEGRNRNPNKRFAILGVSSILLVAVVAVIAVTLNQGDVPEEEAARIASSQKTSVDILCHSTEYAKTCKKSLKNVAANGTADTKTLVKAAINATAVELLSHIRNSSLYKDLGKDNMTRQAMDICREVFQYAVNGIQKSADTIDKFEYGKLSEYIYDLRVWVAGSLTHQHTCLEGFVNTSTKAGETMTKVLNTSMELSSNALDMLNVISGLMKDLNLTSFGNRRLLSEDTPTLNDYPPWVTQEKRRLLEMGTENPDAVVSQDGSGQFKSINEALQSVPANNEKPFVIYVKEGVYRENVEMSVLMTHVTIVGDGPTKTRFSGSLNYDDGVQTYKTATFAVNAPNFMAKDVGFENTAGSEKHQAVALRVTADQAVFLNCHMDGFQDTLYAQSQRQFYRDCSVTGTVDFVFGDAVGVFQNCTLIVKKPLGKQRCMVTAGGRVKSDSPTALVFQGCLFTGEPEVFSMPQKVTYLGRPWRAYSKVIIMDSQLDDIFIPEGYMGWMGTEFMDTCTYLEYNNRGTNADTSLRVKWPGVRSLTAEEAADYYPSRFFELYSPNDGDWIVRSRAPYSLGPSPQ 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3315g00003 572 SUPERFAMILY Pectin lyase-like 253 547 IPR011050 -
Vium3315g00003 572 Gene3D - 250 568 IPR012334 -
Vium3315g00003 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 208 IPR035513 -
Vium3315g00003 572 NCBIfam pectinesterase inhibitor domain 47 207 IPR006501 GO:0004857
Vium3315g00003 572 PANTHER PECTINESTERASE 22 558 - -
Vium3315g00003 572 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Vium3315g00003 572 Pfam Pectinesterase 255 547 IPR000070 GO:0030599|GO:0042545
Vium3315g00003 572 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Vium3315g00003 572 FunFam Pectinesterase 4 252 569 - -
Vium3315g00003 572 CDD PMEI-like_3 58 209 - -
Vium3315g00003 572 SMART PMEI_2 50 203 IPR006501 GO:0004857
Vium3315g00003 572 FunFam Pectinesterase 51 208 - -
Vium3315g00003 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Vium3315g00003 572 Pfam Plant invertase/pectin methylesterase inhibitor 55 203 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3315g00003 Vium-Chr3315 19009 20938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3315g00003 11 568 Carbohydrate Esterase AT3G05610 41.947 9.64e-167 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3315g00003 K01051 - gmx:100784682 746.503