LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3314g00033	ATGAATGCTCCTACCACCGTAACCGCCATCACCACCACACCGCCGAGTAGGGATGAACCCGACTACGACAGCAGCTCCTCCTCCATCACCGTGCCGGAATCCAGCCGGAGCTGGATGACCAACCTCAGCTTCGGCAGCCGCCGCCGCCGGAGCTCGGTCTCCGTGTGCTCCTCCACCCTGGAGAGTCCGCACGCGAGGCCCCACAAGGCGAACCAGGCTGCATGGGAGGTCATGCGGCGGCTCCGTCGCGACAAGGGGCAGGTCGGTCTGGAGCACTTCCGCCTGATGCGGCGGCTGGGGAGCGGCGACATCGGGAACGTGTACCTTTGCCAGATAAGGAACCCCGTGGTGGGGTTGCCGCAGTGCTTTTATGCGATGAAGGTGGTGGACAGAGAGGCACTTGCGATACGGAAGAAGCTGCAGAGGGCGGAGATGGAGAAGGAGATTCTCGCCATGCTTGATCACCCCTTCTTGCCTACTTTGTACACTGAGTTTGACGCTTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGTGGCGACTTGTACGCTGCACGCCAACGCCAGCCCGGGAAGCGCTTTTCTATTACATCCACTAAGTTTTATTCGGCTGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCAGAGAACGTGCTTGTGAGAGAGGATGGACATATTATGCTTTCAGATTTTGATCTTTCACTCAAATGTGACGTTGTGCCGAAGCTGTTAAGGAGCAAGACGAGAGTGGAACGCAGTATCAAGAGTACAAAGAGATCAGTGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGGCATCAAGCAAGAAGAAGAAAGCGACAGTGACAACAGTTATAAGAGAAAATGTTGAGGTGGAAGAGCTTGATCCGGAGCTGGTGGCTGAGCCTATCGATGCCAAGTCGAAGTCATTTGTGGGGACACACGAGTACTTGGCACCAGAAGTTATCTTGGGGCAAGGACATGGGAGTGCAGTGGACTGGTGGACGTTTGGGGTGTTTTTGTATGAGATGTTATACGGGAGAACACCCTTCAAAGGTGAAAATAATGAAAAAACTCTTGTCAACATTTTGAAGCAACCATTGGCTTTCCCCAGAATCGCAGTTAGCAGCAGCAAGGATTATGAAGAGATGGTGAAAGTTCAAGACCTTATAAGCAAGCTCTTGGTGAAGAATCCAAATAAGAGAATTGGAAGCTGTATGGGTTCTGTCGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTAAATTGGGCCTTAATTAGATCAGTTAGGCCTCCTGAAGTCCCCAGTGATATGAACAAAATTAGGAGTAGTAGGGTTTTGCTACCAAAACTAAGCAAAACAGACAGGGATCAGCCATATCAGCTTAGAACTCATCATTTTGAATACTTCTAA	1458	0.5096	MNAPTTVTAITTTPPSRDEPDYDSSSSSITVPESSRSWMTNLSFGSRRRRSSVSVCSSTLESPHARPHKANQAAWEVMRRLRRDKGQVGLEHFRLMRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSITSTKFYSAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRVERSIKSTKRSVPACTAPMQPVLSCFLASSKKKKATVTTVIRENVEVEELDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAVSSSKDYEEMVKVQDLISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPSDMNKIRSSRVLLPKLSKTDRDQPYQLRTHHFEYF	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3314g00033	485	SMART	serkin_6	93	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3314g00033	485	CDD	STKc_phototropin_like	92	450	-	-
	Vium3314g00033	485	PANTHER	FLIPPASE KINASE 1-RELATED	42	454	-	-
	Vium3314g00033	485	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Vium3314g00033	485	FunFam	serine/threonine-protein kinase D6PK-like	321	451	-	-
	Vium3314g00033	485	ProSiteProfiles	Protein kinase domain profile.	93	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3314g00033	485	FunFam	protein kinase PINOID	178	246	-	-
	Vium3314g00033	485	Gene3D	Transferase(Phosphotransferase) domain 1	320	451	-	-
	Vium3314g00033	485	FunFam	protein kinase PINOID 2	91	177	-	-
	Vium3314g00033	485	Gene3D	Transferase(Phosphotransferase) domain 1	178	247	-	-
	Vium3314g00033	485	Pfam	Protein kinase domain	322	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3314g00033	485	Pfam	Protein kinase domain	94	248	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3314g00033	485	SUPERFAMILY	Protein kinase-like (PK-like)	75	454	IPR011009	-
	Vium3314g00033	485	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vium3314g00033	485	Gene3D	Phosphorylase Kinase; domain 1	91	177	-	-
	Vium3314g00033	485	Coils	Coil	126	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3314g00033	Vium-Chr3314	297068	299151	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3314g00033	18	485	AGC Kinase Gene Family	AT2G26700	58.476	0.0	578

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vium3314g00033		Pkinase	3.2e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3314g00033	K08286		-	gmx:100777988	887.871