Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3314g00015 ATGTTGGGCTGCGGCCAAGAAGAGATTGAACTGTCACGGGATGGCAGCCACTACAGTCTCTCCACCGGAATACTTCCGTCTCTCGGGGCCAAAAGCAACCGTAGAATCAAGCTGCGCCGCTTTATTCTATCGCCCTACGGCCGCCGTTACAGGATATGGGAAACTTTCCTTATTATTCTGGTATTTTATACTGCCTGGGTTTCTCCCTTCGAATTCGGATTCTTGAAGAAGCCAGAACCACCGCTTTCCATTTCGGACAATATTGTGAATGGATTTTTTTTCGTGGATATAGTTCTGACCTTCTTTGTGGCTTACATTGACAAAACCACCTATTTGATCGTGGATGATCGGAAACAGATTGCTTGGAAATATGCAAGGACTTGGCTGGCCTTCGATGTTGTCTCCATCATTCCTTCAGAGCTTATACAAAAGTTATCACCTTCTCCTCTTCAATCTTACGGTTTATTCAATATGCTTCGCCTATGGCGTCTTCGGAGAGTCAGTGCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGGTGTGCCAAGCTTATTTCTGTTACTCTCTTCGCTGTTCATTGTGCTGGGTGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCAAAAAAGACGTGGATTGGTTCAACGATGGATAATTTCCTTGAACATAGTTTGTGGTCAAGATACGTGATGTCTATTTACTGGTCTATTACTACCTTAACAACTGTCGGTTATGGAGATTTGCATCCAGTGAATTCAAGGGAGATGACCTTTGACATTTTCTATATGCTCTTTAATCTGGGGTTAACAGCGTATTTGATTGGTAATATGACCAACTTGGTTGTCCACGGCACAAGTCGAACCAGAAAATTTAGAGATACCATCCAAGCTGCCTCAAATTTTGCCCAAAGGAATCAATTGCCTCATCGGTTGCAAGACCAAATGCTTGCCCACTTATGTTTGAAGTATAGAACAGACTCGGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAGGCCATCAGATCCAGCATTTCACATTATCTTTTCAATTCTCTGATTGATAAGGTCTACTTGTTTAAGGAGGTTTCGAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGAACTGGTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAGATAGGTGTGCTCTGTTACAAGCCACAGCTTTTCACTGTTCGAACGAAGCGACTAAGCCAGTTGCTGAGGCTAAATCGTACTACTTTCCTGAATATTGTTCAGGCCAACGTGGGGGACGGAACCATTATCATGAATAATCTGCTTCAGCATTTGAAAGAGCTCAACGATCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGAACATGCTAGCTCGTGGTAGAATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGTGATGACTTGTTGTTACATCAGTTGCTGAAACGAGGAATGGATCCAAACGAATCCGACAACAATCGAAGGACAGCTTTGCATATAGCAGCATCTCAAGGGAAAGAAAACTGTGTTCTGCTTCTGTTAGATTATGGGGCGGATCCCAACATTACAGATTTGGACGGTAATGTGGCACTATGGGAGGCTATGGTGGGAGGACATGAGTCAGTGAGGAAGGTGTTGGCAGAAAATGGAGCTAACTTGCAAGGTGGGGATGTGGGCCAGTTTGCATGTACCGCTGTTGAGCAGAACAGTTTGAAGTTGCTGAAGGAAATAAGGCGCTACGGAGGAGATATCACCCTTCCAAGCATCAACAGTGGGACCACAGCCTTGCACGTTGCAGTGTCGGAGGGGAACGTTGAAATTGTGAAATACCTTTTGGATCACGGGGCAAGCATTGACAAGCCGGACAAGCACGGCTGGACCGCTAGAGGTCTGGCAGATCAGCAATCTCATACAGAAATAAAAGCCATTTTTGACTCCATTGGGGACCAGGTTCAGTCTTTCGTTACCATTCCCGAGAAGCAGAGTGGGTTCAGGTTCCTTGGAAGGTTTACTAGTGAGCCAACCATGCCTTCACCCCTTGACGGCTCATTTCATGGAACGGATGCCTCTTGGAGCCAGAGCCAGAACCGTCCAAGGCGTAGGAGCAGCAATTATCATAATTCACTCTTAGGGATGATGGCAGCAGCACATAATGGGGAAAAGGACCTGCTTTTGACTCTTGACATGAATAACAAGGCAAGCAATGTCATGAAGAGTAGTAATGCAGGTAGTCCAGCTAGAGTGATTATTAGTTGCCCTGAAAAGGGTGAGGTTGTGGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTGCTTGAGATTGGAGCCAAAAAATTTGGTGTCTATCCTGCCAAGGTTTTATGCAAAGATGGAGGTCAAATTGAAGATTTAGAGGTTATTAGAGATGGTGACCATCTGGTCTTTGTCTGTGCTGGTGGGGTTGTAGAATCCAAGTGTCCAACTCCAGCACCACTTTAG 2640 0.4492 MLGCGQEEIELSRDGSHYSLSTGILPSLGAKSNRRIKLRRFILSPYGRRYRIWETFLIILVFYTAWVSPFEFGFLKKPEPPLSISDNIVNGFFFVDIVLTFFVAYIDKTTYLIVDDRKQIAWKYARTWLAFDVVSIIPSELIQKLSPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLISVTLFAVHCAGCFYYLIAARYHDPKKTWIGSTMDNFLEHSLWSRYVMSIYWSITTLTTVGYGDLHPVNSREMTFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFNSLIDKVYLFKEVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELVVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVEIENMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALHIAASQGKENCVLLLLDYGADPNITDLDGNVALWEAMVGGHESVRKVLAENGANLQGGDVGQFACTAVEQNSLKLLKEIRRYGGDITLPSINSGTTALHVAVSEGNVEIVKYLLDHGASIDKPDKHGWTARGLADQQSHTEIKAIFDSIGDQVQSFVTIPEKQSGFRFLGRFTSEPTMPSPLDGSFHGTDASWSQSQNRPRRRSSNYHNSLLGMMAAAHNGEKDLLLTLDMNNKASNVMKSSNAGSPARVIISCPEKGEVVGKLVLLPGSFQELLEIGAKKFGVYPAKVLCKDGGQIEDLEVIRDGDHLVFVCAGGVVESKCPTPAPL 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3314g00015 879 Gene3D - 52 289 - -
Vium3314g00015 879 SUPERFAMILY cAMP-binding domain-like 293 488 IPR018490 -
Vium3314g00015 879 MobiDBLite consensus disorder prediction 738 757 - -
Vium3314g00015 879 SUPERFAMILY Voltage-gated potassium channels 45 289 - -
Vium3314g00015 879 FunFam Potassium channel KAT2 356 492 - -
Vium3314g00015 879 PANTHER POTASSIUM CHANNEL AKT1 16 863 IPR045319 GO:0005249|GO:0006813
Vium3314g00015 879 CDD CAP_ED 368 473 IPR000595 -
Vium3314g00015 879 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium3314g00015 879 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium3314g00015 879 PRINTS EAG/ELK/ERG potassium channel family signature 86 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium3314g00015 879 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium3314g00015 879 PRINTS EAG/ELK/ERG potassium channel family signature 97 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium3314g00015 879 PRINTS EAG/ELK/ERG potassium channel family signature 63 70 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium3314g00015 879 SMART ANK_2a 644 673 IPR002110 GO:0005515
Vium3314g00015 879 SMART ANK_2a 579 608 IPR002110 GO:0005515
Vium3314g00015 879 SMART ANK_2a 546 575 IPR002110 GO:0005515
Vium3314g00015 879 SMART ANK_2a 513 542 IPR002110 GO:0005515
Vium3314g00015 879 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Vium3314g00015 879 Pfam KHA, dimerisation domain of potassium ion channel 800 862 IPR021789 -
Vium3314g00015 879 ProSiteProfiles KHA domain profile. 800 879 IPR021789 -
Vium3314g00015 879 MobiDBLite consensus disorder prediction 730 757 - -
Vium3314g00015 879 Pfam Ion transport protein 51 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium3314g00015 879 Gene3D Jelly Rolls 333 493 IPR014710 -
Vium3314g00015 879 Gene3D - 514 698 IPR036770 -
Vium3314g00015 879 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Vium3314g00015 879 ProSiteProfiles Ankyrin repeat region circular profile. 546 577 - -
Vium3314g00015 879 ProSiteProfiles Ankyrin repeat region circular profile. 644 676 - -
Vium3314g00015 879 SUPERFAMILY Ankyrin repeat 519 699 IPR036770 -
Vium3314g00015 879 SMART cnmp_10 368 485 IPR000595 -
Vium3314g00015 879 FunFam Potassium channel SKOR 51 289 - -
Vium3314g00015 879 Pfam Ankyrin repeats (3 copies) 618 674 IPR002110 GO:0005515
Vium3314g00015 879 Pfam Ankyrin repeats (3 copies) 520 606 IPR002110 GO:0005515
Vium3314g00015 879 ProSiteProfiles cAMP/cGMP binding motif profile. 368 470 IPR000595 -
Vium3314g00015 879 Pfam Cyclic nucleotide-binding domain 388 472 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3314g00015 Vium-Chr3314 132381 138858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3314g00015 10 862 Ion Channels AT2G25600 62.702 0.0 1086
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3314g00015 K21867 - gmx:100819491 1565.82