Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3314g00014 ATGAAGGGGGAAGTACAGCTTCAGCCTCCACCGGTCATGCAAAACCCTAGTGATTCGGACCCTTTGCTCCTTAATCAGGAGGAGGAGGAGTCACCGGGAAGCTCCGGTGAGATCAAAGATGACGAAGAAGACGTTGAGGCAGGCTTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCTGATCCAGAGGATGAATTAATATCTCCATGCATGTGCAAAGGTACTCAACAGTTTGTTCATCGCTCGTGTCTTGATCATTGGCGCTCTGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATTGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTAGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAGACTGTGATTGCAGCTATTGGTGGCTTTGCGTACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGCTGGGATAGGATACTGTCAAAGCATCCTATTCCATTTTATTATTGTATTGGAGTGCTGGCCTTTTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAACACCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCCTGGATTGCTTTCCCGCTTCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCGTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAACTTACAAAGGAATACATAGTAGAGGATCTTCGTGGCTGTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGGCCGCTTGAAAATGCTCAAGCTTTTGTGA 927 0.4542 MKGEVQLQPPPVMQNPSDSDPLLLNQEEEESPGSSGEIKDDEEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHEGRLKMLKLL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3314g00014 308 MobiDBLite consensus disorder prediction 1 42 - -
Vium3314g00014 308 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Vium3314g00014 308 SMART ringv_2 52 104 IPR011016 GO:0008270
Vium3314g00014 308 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
Vium3314g00014 308 SUPERFAMILY RING/U-box 51 108 - -
Vium3314g00014 308 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 308 - -
Vium3314g00014 308 CDD RING_CH-C4HC3_MARCH 53 104 - -
Vium3314g00014 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3314g00014 Vium-Chr3314 124438 132105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3314g00014 1 308 C3H Transcription Factor Family AT1G11020 79.439 5.08e-171 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3314g00014 - - gmx:100818950 608.986