Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3314g00006 ATGAAGGATCCAGCGGAGGATCAAGTGAAATCTAGAAGGGCCCTTCAGAGACCAAAAGACCTTAGAAGAAGAGATAGAAGAAGAGGCCAATGCAAGCAAGATAAATTACAAGAAACAGGACTTGACTCACAATTCATTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCCAGACCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCTAATCATTTCCTGGCAGATATATCAGCTTCTGACTTGAGCCATTACAATGTTACAATAACACCTGAAGTCACTTCTCGTAAAACAAGCAAAGCCATCATATCTGAGTTGGTGAGGCTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGTTTGCTTCCATTTGCATACAAAGAGTTCTCCATAAAATTGAGCCAGGATGACGAGGGTACTGGTGGTACCAGGGAAAGAGAATTTGAAGTGGTGATAAAGTTTGCAGCTCGTGTCAGCATGCATCAATTACGTGAGCTTCTGAGTGGGAAACAAGTGGACACCCCGCAAGAGGCGCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCAGCTCAGAGCTTCGTGTCAATTGGGAGGTTTCTCTATTCTCCGGATTTAAGAAAACCACAGCAGTTAGGTGGTGGTCTGGAATCATGGCGCGGCATCTACCAAAGTATAAGGCCTACTCAGATGGGATTGTCCCTTAATATTGACATGTCATCAATGGCTTTTATTGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGACGTGCTCTCAAAGCCACTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTCGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGAATTACAGGATTGACATCACAACCTACAAGGGAACTCAATTTCCCTGTCGACGAGAAAATGAACATGAAATCAGTGGTTGATTACTTTCAAGAAATGTATGGATATACTATTATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGTCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGTAAGATAGTTGGAGGTCAGAGATATACAAAAGGACTTAACGAAAAGCAGATAACTTCTCTGCTGAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGACATTCTACAGACACTTCAAGAAAATAATTATGAGTATAATCCCTATGTAAAGGAGTTTGGTATCAGCATTGACAACAAACTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAACACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTATCCAAGAAATTGCTCGCGGGTTTTGCCAACAGTTGGTTCAAATGTGCCAAATCTCAGGCATGGAATTTAGTCTAGATCCTGTGATTCCTATATACACAGCAAGACCTGATATGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTGCGAGATAAACTTGGTGGGAAAGAACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTTCAAAACACGTGTTCAAGATCAATAGACAGTATCTGGCAAATGTGGCCTTAAAGATCAATGTCAAGTTGGGAGGAAGGAACACAGTACTTTTGGATGCCTTGAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTCGGAGCTGATGTGACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTATGCAGGATTAGTATGTACTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTGTAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCGTTTAAGAAGGCAACTGGACAAAAACCACTGAGAATAATATTTTACAGGGATGGCGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTATGAGCTTGATGCCATTCGTAAGGCTTGTGCATCTTTGGAACCGAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAGAAACGGCATCACACCAGACTATTCTCAAACAATCATGACGACAGAAACAGCACTGATAAGAGTGGGAATATCTTACCTGGTACCGTGGTGGATTCCAAGATCTGTCATCCGACGGAATTCGATTTCTATTTATGCAGTCATGCTGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAGAACAATTTCAGTGCTGATGAGATTCAATCTCTGACCAACAACTTGTGCTACACATATGCAAGATGTACTCGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCACTTGGCAGCATACAGAGCTCGTTTCTACATGGAACCAGATGTTCATGAGATTGGTAAATCTCGAGGTGGTAGATCAAAAGATGAGTCAGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTGATGTTTTACTGTTGA 2721 0.4263 MKDPAEDQVKSRRALQRPKDLRRRDRRRGQCKQDKLQETGLDSQFISSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVTITPEVTSRKTSKAIISELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFAYKEFSIKLSQDDEGTGGTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSFVSIGRFLYSPDLRKPQQLGGGLESWRGIYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTLQENNYEYNPYVKEFGISIDNKLASVEARVLPAPWLKYHDTGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQEIARGFCQQLVQMCQISGMEFSLDPVIPIYTARPDMVKKALKYVHSAVRDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKLGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCTQPHREELIQDLFKCWKDPHHGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHEIGKSRGGRSKDESVRPLPALKEKVKNVMFYC 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3314g00006 906 CDD Piwi_ago-like 420 869 IPR045246 -
Vium3314g00006 906 Pfam N-terminal domain of argonaute 67 200 IPR032474 -
Vium3314g00006 906 CDD PAZ_argonaute_like 261 375 - -
Vium3314g00006 906 MobiDBLite consensus disorder prediction 1 15 - -
Vium3314g00006 906 Pfam Argonaute linker 1 domain 210 259 IPR014811 -
Vium3314g00006 906 Pfam Argonaute linker 2 domain 404 448 IPR032472 -
Vium3314g00006 906 SUPERFAMILY Ribonuclease H-like 540 871 IPR012337 -
Vium3314g00006 906 SMART DUF1785_2 209 261 IPR014811 -
Vium3314g00006 906 SMART Piwi_a_2 549 870 IPR003165 GO:0003676
Vium3314g00006 906 FunFam Argonaute 10 440 612 - -
Vium3314g00006 906 FunFam Protein argonaute-2 255 381 - -
Vium3314g00006 906 Gene3D paz domain 256 380 - -
Vium3314g00006 906 FunFam protein argonaute 10-like 618 906 - -
Vium3314g00006 906 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 870 - -
Vium3314g00006 906 Gene3D - 618 906 IPR036397 GO:0003676
Vium3314g00006 906 ProSiteProfiles Piwi domain profile. 549 870 IPR003165 GO:0003676
Vium3314g00006 906 ProSiteProfiles PAZ domain profile. 262 376 IPR003100 GO:0005515
Vium3314g00006 906 MobiDBLite consensus disorder prediction 1 33 - -
Vium3314g00006 906 Pfam PAZ domain 287 392 IPR003100 GO:0005515
Vium3314g00006 906 Pfam Piwi domain 550 869 IPR003165 GO:0003676
Vium3314g00006 906 SMART PAZ_2_a_3 266 398 IPR003100 GO:0005515
Vium3314g00006 906 Pfam Mid domain of argonaute 459 535 IPR032473 -
Vium3314g00006 906 SUPERFAMILY PAZ domain 257 416 IPR036085 GO:0005515
Vium3314g00006 906 Gene3D - 440 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3314g00006 Vium-Chr3314 36084 48226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3314g00006 55 906 Eukaryotic Initiation Factors Gene Family AT5G43810 74.797 0.0 1387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3314g00006 K11593 - gmx:100808457 1715.28