Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3314g00002 ATGACGATGGACGACGATAGCTCTATATATGTTGGGGGTCTTCCTTACGACATCACCGACGAAACCATTCGCACTGTCTTCAATTTGTATGGTGCCATTCTCGATGTGAAGATTATCAACGACCAACGCGGTAGGGGGAAGTGCTATTGTTTTGTTACTTTCACGAATCCTAGGTCAGCGATCGACGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGTCTCGTGGGGGCAGGTCAAACTTTGGCAGAGAACGGTATTACCATCATAATGATGAGAGGAATGGAGATTGGGATCGTGGGAGAGATCGAGACCGAGATTATGATCATGATAATAGTGGTAGGGATGGATACAGGAATCGGAGCAATGATTGGAGTCGGGACCGTGATAGGTCTCGAGACCGAGACCAGGACAGGGATAGAAGATTTGAGCATATACATGACTATGATGAAGATAGAGATCCTATGTTAGATAATGACTGGGGTAGAGAGGATGATAGAGTTGAAAATGAACAAGAACATAGCAGGGGGGATGGTGGAGATGTGGATAGAGACCACAACTTGGATTTTAATGCAGACAGGAAAACGGATAGGACAAGTGACCTTGATAGAAGTTTTGATGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACAAATCAACATAGCATGGATCTTTCATCAGAATCAACTGGTGCTGACGATGATCAGGTAGAAGCTCAATTAGAGAGCTCAACTAAGCAGCTTGATCAACTCAAAAAAGAGGTTTCTCAAATGGAAGAGGGATTGGAAGAGAAAAGGGTCCATGTTAAGGAATTGCAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAACACTTCATATCGTCAGATGCAGTTGATAAAGGCTCTAATTGATACAGTACTGTTAGAGATTGATGGTGATGGCGTTGGATTAAAGGATGGACAACTAACAAATGGAAGTCTTGATGCTAGATAG 1032 0.4293 MTMDDDSSIYVGGLPYDITDETIRTVFNLYGAILDVKIINDQRGRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYHHNDERNGDWDRGRDRDRDYDHDNSGRDGYRNRSNDWSRDRDRSRDRDQDRDRRFEHIHDYDEDRDPMLDNDWGREDDRVENEQEHSRGDGGDVDRDHNLDFNADRKTDRTSDLDRSFDEDRKDQSRRNNDLNVTNQHSMDLSSESTGADDDQVEAQLESSTKQLDQLKKEVSQMEEGLEEKRVHVKELQKQSKKLEDALINAKKNTSYRQMQLIKALIDTVLLEIDGDGVGLKDGQLTNGSLDAR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3314g00002 343 Gene3D - 2 98 IPR012677 -
Vium3314g00002 343 MobiDBLite consensus disorder prediction 160 249 - -
Vium3314g00002 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vium3314g00002 343 SMART rrm1_1 8 80 IPR000504 GO:0003723
Vium3314g00002 343 MobiDBLite consensus disorder prediction 88 148 - -
Vium3314g00002 343 MobiDBLite consensus disorder prediction 227 249 - -
Vium3314g00002 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Vium3314g00002 343 CDD RRM_SF 9 80 - -
Vium3314g00002 343 PANTHER GEO13361P1-RELATED 6 143 - -
Vium3314g00002 343 Coils Coil 248 303 - -
Vium3314g00002 343 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Vium3314g00002 343 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 195 - -
Vium3314g00002 343 MobiDBLite consensus disorder prediction 160 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3314g00002 Vium-Chr3314 23303 27308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3314g00002 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 2.93e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3314g00002 - - vun:114179118 596.66