Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3314g00001 ATGGCATCACCATCAGAACTTAGTCTTGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCCTTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATTGACGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAGCTTCTCACCAACGCCATGGAGGCTTCAAGACAGCAACTTCAAGCCTTTAAAGTAAACCATGGTGCAAAACCAGTTCTGGAAGAATTCATACCCATGAAGCACTTGGCCTCAGAAAGCTCAGAGAAGGCAACAAACATATCAGACAAGGCAAATTGGATGACATCTGCGCAACTGTGGAGCCAAGCGAGTGAAGGAGCCAAACAACAACCAACATTAACATCACCCAAAGAAGCTGATATAGGCTTCAGCATCAGCCCCAAGCTGGCTCTGGACAACAAGCCGAGGAACGGTGGAGGAGCCTTCCTTCCATTTTCAAAGGAAAGAAACTCCTGCCAAGGCTCCGCATTGCGGCCTCTACCTGAACTTGCCCTTGCCTCTTCGGAGAAAGAAATGGAGGACAAGAAACGTGCAGAGGCAGAAAAGGGACTTTCGTGTCAGAATAAGAAGGAGAATTCTGGCAGTGATGGAGCTGTGGTTGATCAAGGAAAAAGTGGTAGCCCAGTTGCATCATCTCTTGCACAAACAACAACAACCACTTCGCAAACTCATAGGAAAGCTAGAAGGTGCTGGTCACCAGACTTGCACCGTCGATTTGTTAATGCTCTCCAGATGCTCGGTGGATCACAAGTGGCAACCCCAAAGCAGATAAGGGAATTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGCCCTCAAGCGAATGCAGCTGCTCCACAGCTCGTGGTCCTAGGCGGAATCTGGGTCCCACCGGAATATGCCACTGCGGCACACACAGGCACCCCAACTCTCTACGGCGCCCACCCAACCTCTCACGCGCCGCCGCCACACTACTGCACTGCCACTCCTGTGCCGCAAGAGTTCTACACTGCGGCGCCGCAGCAGCAGCTGCTTCCGCCTCCTCCGCCTCATCACAACCCGCTCCACCACCTGCACATGTACAAGGCAGCGGCACACGGGCATGGGTCACCGGAGTCGGACCTTCCCGGAGGAGGAGAGAGGTCGGAGAGCATTGAGGACGGGAAGTCGGAGAGTAGCAGCTGGAAGGGAGAGAGTGGGGAGAACGAAGGGGAGAGGAAAGGGATTGGTGAAGAGAGCAATGGGAGTGAAATCACTCTGAAATTCTAG 1353 0.5174 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGAKPVLEEFIPMKHLASESSEKATNISDKANWMTSAQLWSQASEGAKQQPTLTSPKEADIGFSISPKLALDNKPRNGGGAFLPFSKERNSCQGSALRPLPELALASSEKEMEDKKRAEAEKGLSCQNKKENSGSDGAVVDQGKSGSPVASSLAQTTTTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQANAAAPQLVVLGGIWVPPEYATAAHTGTPTLYGAHPTSHAPPPHYCTATPVPQEFYTAAPQQQLLPPPPPHHNPLHHLHMYKAAAHGHGSPESDLPGGGERSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3314g00001 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Vium3314g00001 450 Coils Coil 33 53 - -
Vium3314g00001 450 MobiDBLite consensus disorder prediction 393 450 - -
Vium3314g00001 450 Gene3D - 243 301 - -
Vium3314g00001 450 MobiDBLite consensus disorder prediction 185 204 - -
Vium3314g00001 450 MobiDBLite consensus disorder prediction 407 440 - -
Vium3314g00001 450 MobiDBLite consensus disorder prediction 205 244 - -
Vium3314g00001 450 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Vium3314g00001 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 424 IPR044787 GO:0003700|GO:0006355
Vium3314g00001 450 MobiDBLite consensus disorder prediction 168 248 - -
Vium3314g00001 450 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Vium3314g00001 450 FunFam Myb family transcription factor 243 301 - -
Vium3314g00001 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Vium3314g00001 450 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3314g00001 Vium-Chr3314 10403 13327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3314g00001 1 450 G2-like Transcription Factor Family AT2G03500 50.311 2.82e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3314g00001 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3314g00001 - - gmx:100807925 781.556