Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3313g00002 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTTTGGTCTCCCGAGGAGGATGAAAAGCTTCTGAGGCATATTACTAGGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTCAGGTGGATCAATTACCTTAGACCTGATTTAAAGAGAGGAACATTCTCCCAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTGGGGAACAGATGGTCTCAAATTGCGGCACAGTTACCGGGGAGGACCGATAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAAGGCATAGACCCTGTCACACATAAACCACTGTCCCAGGTTGAGAACGGAGATGACACCGGTAAGAGCCAAGGTAAAGCACCGGAAGTGTCCAATGAATTGAACCTCCTGAAATCAGAGAGCTCCAAGTCAGATTCAGCTTCCTATGAGCAGAGAACATCAATTTCTCCAAAAGCCTATGCACCCGAGATGGATGGTTCCTGCAGCTCCAAGATTTACAGCAGAAGTGACAGCAATTTCGTAACCAACAACTGTTACAACAAAGACTTGTTCCTAGACAGGTTTATGAATAGTAGTCGCCAAGAGAGCTACAACACTAGTTGCCAGCCCTCAGATTTGATGGGAACTTTTCCAATTCAGATGAGTTATGCAACCAATGACTGTCTCCCTAATGATTCAAACTCTACTCATTGGTTCGGCCAAACTGGAAGGCCTTTCGATATGAACTCTGAATTTCCTTTCAATGCTGCCACTTCTATTAATCATCCTACACCCACAACCAATTTGTTTCTTCCTAATTCGTTTTGCTACAAGCCTTCACTTGCTGTTCCTTCTGACAGTGTTTCTACAGCCTATGGATCTCATTACTGGGAAGCCAGTGCCTCCAACAATAGCAATAGCAGCATTAGGAGTAATGGCAGCACAGAGTTGAAAGGTAGCAGCCCCTTAAACATCTTTTCTTCTTGGGGATTGGCAGAATGTAGCACCTCTACTACTAAAGAGGGGCAAATTCATATGATGGAGAATCATACAGAAGAAGCTAAGTGGGATGAGTACCTTCACAACCCAATCTCAATGCTGGCTTCTGTACAAAATCAAGCTCCCGAATCCTTATGCAACGAGATAAAAACATCAATGCATTTGGTACCTGACACTTTAGGGGCTATGTTACCTCATAGCACGAAGCAGCAAGAACCATCTCAAACCTCTAGTATATTTTCCAAGGACATCCAGAAGCTCAGGGCAGCCTTTGGAAACATGTAA 1338 0.4395 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITRYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSQVENGDDTGKSQGKAPEVSNELNLLKSESSKSDSASYEQRTSISPKAYAPEMDGSCSSKIYSRSDSNFVTNNCYNKDLFLDRFMNSSRQESYNTSCQPSDLMGTFPIQMSYATNDCLPNDSNSTHWFGQTGRPFDMNSEFPFNAATSINHPTPTTNLFLPNSFCYKPSLAVPSDSVSTAYGSHYWEASASNNSNSSIRSNGSTELKGSSPLNIFSSWGLAECSTSTTKEGQIHMMENHTEEAKWDEYLHNPISMLASVQNQAPESLCNEIKTSMHLVPDTLGAMLPHSTKQQEPSQTSSIFSKDIQKLRAAFGNM 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3313g00002 445 Gene3D - 69 140 - -
Vium3313g00002 445 FunFam MYB transcription factor 68 140 - -
Vium3313g00002 445 SMART sant 66 114 IPR001005 -
Vium3313g00002 445 SMART sant 13 63 IPR001005 -
Vium3313g00002 445 FunFam Myb transcription factor 11 67 - -
Vium3313g00002 445 PANTHER MYB DOMAIN PROTEIN 55 1 359 - -
Vium3313g00002 445 CDD SANT 17 61 IPR001005 -
Vium3313g00002 445 Gene3D - 11 67 - -
Vium3313g00002 445 MobiDBLite consensus disorder prediction 131 173 - -
Vium3313g00002 445 MobiDBLite consensus disorder prediction 122 178 - -
Vium3313g00002 445 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium3313g00002 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium3313g00002 445 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium3313g00002 445 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium3313g00002 445 CDD SANT 69 109 IPR001005 -
Vium3313g00002 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium3313g00002 445 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vium3313g00002 445 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3313g00002 Vium-Chr3313 39869 42241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3313g00002 1 137 MYB Transcription Factor Family AT4G01680 91.241 3.46e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3313g00002 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3313g00002 K09422 - gmx:100782199 752.281