Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3310g00001 ATGACACCTCTCTCAAAGCTCTTTCACAAGTTCTGTGCCGAAATTATAATCATATTAGCATCCCTGATAATAGAACTTATCATTCTGATTCAGAAACTAAAATCATCGCCACGCGCAATCAGCACCCAGCAATACCTGAAATTCATCGAGAAGAAGAACCCCACGATTTGCTACACGAAGGGGTTGTCGAAGGCGGAACAGGGTGGTGCTGCAGAGTGTAGGGTATGCCTGTGCGAATTGGAGGAAGGGGAGAAGGTGAGGAAGCTGCAATGCCGTCACGTGTTTCACAGGGATTGTTTGGACAAGTGGTTGCAACAATATTGGGCCACGTGTCCTCTTTGTCGGAAACAAGTGGTGCCGGAAGATGTCGTCTTCAAGCACCGTCAGCATCAGAATCAAACAGAGGGAGGTTTTGATCGGAATCATGATGACAACCTTCCCTACTTTTTATCAGCATTTCGTCGTGGCAACACTCTGCACAGATATTTCTGA 492 0.4654 MTPLSKLFHKFCAEIIIILASLIIELIILIQKLKSSPRAISTQQYLKFIEKKNPTICYTKGLSKAEQGGAAECRVCLCELEEGEKVRKLQCRHVFHRDCLDKWLQQYWATCPLCRKQVVPEDVVFKHRQHQNQTEGGFDRNHDDNLPYFLSAFRRGNTLHRYF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3310g00001 163 PANTHER - 1 158 - -
Vium3310g00001 163 SUPERFAMILY RING/U-box 54 121 - -
Vium3310g00001 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 120 IPR013083 -
Vium3310g00001 163 CDD RING-H2_PA-TM-RING 72 115 - -
Vium3310g00001 163 SMART ring_2 73 114 IPR001841 -
Vium3310g00001 163 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Vium3310g00001 163 Pfam Ring finger domain 72 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3310g00001 Vium-Chr3310 11340 12132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3310g00001 71 126 C3H Transcription Factor Family AT1G15100 58.929 2.18e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3310g00001 K16282 - gmx:102661897 216.853