Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3307g00005 ATGGCAGCAGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAATTGCAATTGTGGTTGGTTTGCTGTTGCTCCTCGGGGCTTATTGGTGGAGTGGCCACAATACTGATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAAATTTTGCAATCTTTGCCTTCTCTTGTTGACATACATGTTCCTAATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGAAGAGAATCCGTATCTATTTAACGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTGACCTTGTTTGCATTTAAGTGCCTGTCTCCATCAGGTAAAGCCTAG 498 0.3996 MAAAVMLFRTSKTTIVIAIVVGLLLLLGAYWWSGHNTDVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIHVPNGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCLSPSGKA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3307g00005 165 SUPERFAMILY Metallo-dependent phosphatases 48 161 IPR029052 -
Vium3307g00005 165 Pfam Calcineurin-like phosphoesterase 103 157 IPR004843 GO:0016787
Vium3307g00005 165 Pfam PPP5 TPR repeat region 36 95 IPR013235 -
Vium3307g00005 165 Gene3D - 31 163 IPR029052 -
Vium3307g00005 165 PRINTS Serine/threonine phosphatase family signature 133 160 IPR006186 GO:0016787
Vium3307g00005 165 PRINTS Serine/threonine phosphatase family signature 103 130 IPR006186 GO:0016787
Vium3307g00005 165 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 37 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3307g00005 Vium-Chr3307 33294 36429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3307g00005 49 161 Calmodulin-binding Proteins AT5G63870 32.258 5.28e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3307g00005 K04460 - vum:124834012 313.538