Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3307g00004 ATGGCAGCAGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAATTGCAATTGTGGTTGGTTTGCTGTTGCTCCTCGGGGCTTATTGGTGGAGTGGCCACAATACTGGTACATATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAAATTTTGCAATCTTTGCCTTCTCTTGTTGACATACATGTTCCTAATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGAAGAGAATCCGTATCTATTTAACGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTGACCTTGTTTGCATTTAAGTGCCTGTCTCCATCAGGTAAAGCCTAG 504 0.3988 MAAAVMLFRTSKTTIVIAIVVGLLLLLGAYWWSGHNTGTYVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIHVPNGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCLSPSGKA 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3307g00004 167 Gene3D - 33 165 IPR029052 -
Vium3307g00004 167 PRINTS Serine/threonine phosphatase family signature 105 132 IPR006186 GO:0016787
Vium3307g00004 167 PRINTS Serine/threonine phosphatase family signature 135 162 IPR006186 GO:0016787
Vium3307g00004 167 SUPERFAMILY Metallo-dependent phosphatases 50 163 IPR029052 -
Vium3307g00004 167 Pfam Calcineurin-like phosphoesterase 105 159 IPR004843 GO:0016787
Vium3307g00004 167 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 40 164 - -
Vium3307g00004 167 Pfam PPP5 TPR repeat region 40 97 IPR013235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3307g00004 Vium-Chr3307 33294 36446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3307g00004 51 163 Calmodulin-binding Proteins AT5G63870 32.258 5.83e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3307g00004 K04460 - vum:124834012 325.865