Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3307g00003 ATGGCCTCTTTTTGTGATCATATTATTATTCCAAGTTCTACTGTTGCATATAATTTTACTCATGGAAATGATCAAATTTGGTGTTTCGTTTTAATGCTAGATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAAATTTTGCAATCTTTGCCTTCTCTTGTTGACATACATGTTCCTAATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGAAGAGAATCCGTATCTATTTAACGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTGACCTTGTTTGCATTTAAGTGCCTGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGATACTTTTGTCGAACTCTTTGCGGAAGTATTCTGCTTTTTACCACTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTCAGTGTTGACGGGGTCAAACTCTCTGACATCCGATCAATTAATCGATTCTGTGAACCTCCTGAAGAAGGGCTGATGTGTGAAATTCTTTGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTGGGTCTTTCTTTTGGTCCAGATGTTACAGAACAGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGAGATCTCATGAAGTAAAGGATGAGGGTTACGAGATTGAACATGATGGTAAACTCATAACTGTCTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGGTTTGAAGCACCAGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGTCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 1086 0.3913 MASFCDHIIIPSSTVAYNFTHGNDQIWCFVLMLDVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIHVPNGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCLSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNDTFVELFAEVFCFLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCEILWSDPQPLPGRGPSKRGVGLSFGPDVTEQFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVSHPDVKPMAYANNFLRMFS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3307g00003 361 Pfam PPP5 TPR repeat region 33 91 IPR013235 -
Vium3307g00003 361 PIRSF PPPtase_5 13 361 - -
Vium3307g00003 361 SMART pp2a_7 67 343 IPR006186 GO:0016787
Vium3307g00003 361 Pfam Calcineurin-like phosphoesterase 99 293 IPR004843 GO:0016787
Vium3307g00003 361 SUPERFAMILY Metallo-dependent phosphatases 47 355 IPR029052 -
Vium3307g00003 361 Gene3D - 25 360 IPR029052 -
Vium3307g00003 361 CDD MPP_PP5_C 39 354 IPR041753 -
Vium3307g00003 361 PRINTS Serine/threonine phosphatase family signature 196 222 IPR006186 GO:0016787
Vium3307g00003 361 PRINTS Serine/threonine phosphatase family signature 129 156 IPR006186 GO:0016787
Vium3307g00003 361 PRINTS Serine/threonine phosphatase family signature 226 253 IPR006186 GO:0016787
Vium3307g00003 361 PRINTS Serine/threonine phosphatase family signature 99 126 IPR006186 GO:0016787
Vium3307g00003 361 PRINTS Serine/threonine phosphatase family signature 282 302 IPR006186 GO:0016787
Vium3307g00003 361 PRINTS Serine/threonine phosphatase family signature 162 186 IPR006186 GO:0016787
Vium3307g00003 361 PRINTS Serine/threonine phosphatase family signature 304 320 IPR006186 GO:0016787
Vium3307g00003 361 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 34 354 - -
Vium3307g00003 361 FunFam Serine/threonine-protein phosphatase 5 23 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3307g00003 Vium-Chr3307 22990 27328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3307g00003 45 288 Calmodulin-binding Proteins AT5G63870 33.910 6.50e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3307g00003 K04460 - gmx:100820099 645.195