Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3307g00002 ATGGCAGCAGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAATTGCAATTGTGGTTGGTTTGCTGTTGCTCCTCGGGGCTTATTGGTGGAGTGGCCACAATACTGGTACATATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAAATTTTGCAATCTTTGCCTTCTCTTGTTGACATACATGTTCCTAATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGAAGAGAATCCGTATCTATTTAACGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTGACCTTGTTTGCATTTAAGTGCCTGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGATACTTTTGTCGAACTCTTTGCGGAAGTATTCTGCTTTTTACCACTGGCTCATGTGATAAATGAGAAAGTTTTCGTTGTTCATGGAGGTCTTTTCAGTGTTGACGGGGTCAAACTCTCTGACATCCGATCAATTAATCGATTCTGTGAACCTCCTGAAGAAGGGCTGATGTGTGAAATTCTTTGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTGGGTCTTTCTTTTGGTCCAGATGTTACAGAACAGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGAGATCTCATGAAGTAAAGGATGAGGGTTACGAGATTGAACATGATGGTAAACTCATAACTGTCTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGGTTTGAAGCACCAGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGTCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 1104 0.4085 MAAAVMLFRTSKTTIVIAIVVGLLLLLGAYWWSGHNTGTYVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIHVPNGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCLSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNDTFVELFAEVFCFLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCEILWSDPQPLPGRGPSKRGVGLSFGPDVTEQFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVSHPDVKPMAYANNFLRMFS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3307g00002 367 SMART pp2a_7 73 349 IPR006186 GO:0016787
Vium3307g00002 367 PIRSF PPPtase_5 8 367 - -
Vium3307g00002 367 Pfam Calcineurin-like phosphoesterase 105 299 IPR004843 GO:0016787
Vium3307g00002 367 Gene3D - 33 366 IPR029052 -
Vium3307g00002 367 PRINTS Serine/threonine phosphatase family signature 105 132 IPR006186 GO:0016787
Vium3307g00002 367 PRINTS Serine/threonine phosphatase family signature 135 162 IPR006186 GO:0016787
Vium3307g00002 367 PRINTS Serine/threonine phosphatase family signature 232 259 IPR006186 GO:0016787
Vium3307g00002 367 PRINTS Serine/threonine phosphatase family signature 310 326 IPR006186 GO:0016787
Vium3307g00002 367 PRINTS Serine/threonine phosphatase family signature 202 228 IPR006186 GO:0016787
Vium3307g00002 367 PRINTS Serine/threonine phosphatase family signature 168 192 IPR006186 GO:0016787
Vium3307g00002 367 PRINTS Serine/threonine phosphatase family signature 288 308 IPR006186 GO:0016787
Vium3307g00002 367 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 40 360 - -
Vium3307g00002 367 Pfam PPP5 TPR repeat region 40 97 IPR013235 -
Vium3307g00002 367 FunFam Serine/threonine-protein phosphatase 5 32 366 - -
Vium3307g00002 367 SUPERFAMILY Metallo-dependent phosphatases 53 361 IPR029052 -
Vium3307g00002 367 CDD MPP_PP5_C 45 360 IPR041753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3307g00002 Vium-Chr3307 22990 31988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3307g00002 51 294 Calmodulin-binding Proteins AT5G63870 33.910 8.16e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3307g00002 K04460 - gmx:100820099 696.427