Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3307g00001 TGGGCATTAGCTGAAATGTTAAAAAACCCTAATATTTTGATTAGGGCACAAAAAGAGCTGGATGAAGTAATAGGAAGGCAAAGAGTCCTTGTTGAATCCGACCTACCCAAATTACCATACCTTGAAGCAATCTGCAAGGAGACATATAGGATGCATCCGTCTACACCCCTCAGTGTTCCTAGGATGGCAACTGAAGCATGCAATGTTAATGGGTACTACATCCCCAAGAACACAAGGCTGAATGTCAACATATGGGCAATAGGGAGAGACCCCAATGTGTGGTCAAACCCATTAGAGTTCAATCCAGAGAGGTTTCTCAGAGGGAAGAGTGCAAAAGTTGATCCTACTGGAGTTCATTTTGAGTTAATTCCCTTTGGAGCTGGAAGGAGGATTTGTGCAGGCTATAGAATGGCTATTGTGGTGATTCAGTACATTTTGGGCACTTTGGTGCATTCTTTTGAGTGGAAGTTACCTAATGGTCAAGAGTTAAGCATGGATGAGGCCTTTGGACTCACTTTGCAAAAGGCAGTGCCTCTCTCAGCCATCATTAGCCCTCGTTTGCTCTCAGATGCTTATGTTTGA 582 0.4364 WALAEMLKNPNILIRAQKELDEVIGRQRVLVESDLPKLPYLEAICKETYRMHPSTPLSVPRMATEACNVNGYYIPKNTRLNVNIWAIGRDPNVWSNPLEFNPERFLRGKSAKVDPTGVHFELIPFGAGRRICAGYRMAIVVIQYILGTLVHSFEWKLPNGQELSMDEAFGLTLQKAVPLSAIISPRLLSDAYV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3307g00001 193 PANTHER CYTOCHROME P450 98A9 1 191 - -
Vium3307g00001 193 Gene3D Cytochrome P450 1 186 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 PRINTS P450 superfamily signature 43 54 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 PRINTS P450 superfamily signature 132 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 PRINTS P450 superfamily signature 123 132 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 PRINTS P450 superfamily signature 8 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 SUPERFAMILY Cytochrome P450 1 186 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 FunFam Predicted protein 1 181 - -
Vium3307g00001 193 PRINTS E-class P450 group I signature 132 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 PRINTS E-class P450 group I signature 83 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 PRINTS E-class P450 group I signature 42 60 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 PRINTS E-class P450 group I signature 122 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3307g00001 193 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 125 134 IPR017972 GO:0005506|GO:0016705
Vium3307g00001 193 Pfam Cytochrome P450 1 174 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3307g00001 Vium-Chr3307 9336 9917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3307g00001 1 192 Cytochrome P450 AT5G07990 53.571 4.57e-75 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3307g00001 K13083 - ming:122063430 310.071