Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3301g00003 ATGTCTGCAAACGTAAACTACGGCATGCCCCTCACTCACCCTCACTGGTTCTCATCAAAATCTGGAATTTACCATAGCAAGCATGCCCCTGTTGACCTTCCCAGCGACCCTTTTCTTGATGCTGTCTCCTTCATTTTTTCCCACCGCCATGATGGGGTGTCGGCCCTCGTTGATTCTTCATCTGGGTGTTCCATTTCCTACTCAAAGTTGCTACCTTTGGTCAAATCCGTTGCCTGTGGTCTTCACAAAATGGGTGTTTCGCAAGGTGATGTGGTTCTGATTCTTCTTCCAAATTCCATTTACTATCCCATTGTGTTCTTAGGCGTTCTCTATCTAGGAGCTATTGTCACACCATTGAACCCTCTTAGCAGTGTCCATGAAATACGCAGACATGTTGCTGAGTGTGGTGTGAGTTTGGCTTTTACTGTGCCTGAAAATTTTAAGAAACTAGAGCCATTGGGAATTTCTGTTATTGCTGTGCCAGAAAATGAGAAGGGTTTGAGACATGGTTGTTTTTCATGCTTTTGTTACTTGATTTCTTGTGACTTCGATTTGCCTCAGAGGCCTGTTATCAAGCAGGATGACACTGCTGGGATATTGTATTCTTCGGGTACTACTGGGGTGAGCAAAGGGGTTGTTCTGTCCCATAAAAATCTTATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAATGCTCTTGCTTGAGGAATGTGTATCTGGCTGTTTTGCCAATGTTCCATGTGTATGGCTTGTCGCTTTTTGCTGTGGGATTGTTGTCTTTGGGTTCTACTGTCGTTGTGATGAGGAAATTTGACACAGATGAGGTTGTCAGGGTGATTGATGAATATAAAGTTACCCACTTTCCTGTTGTTCCGCCGATGTTGACAGCATTGATAACGAGGGCAAATGGTGTTAATGACTGTAAGTTGCAGAGTTTGATACAGGTCTCCTGTGGTGCAGCGCCTTTGAGCTCAGGAGTTGTTGATGATTTTCTCCGAACTTTTCCCGATGTTGATTTCATACAGGGTTATGGAATGACTGAGTCAACAGCCGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGAAATTATTCCTCAATAGGGTTATTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTGCATTTTTGCCCCCTGGCAGCAGTGGTGAACTTTGGTTGAGAGGGCCTTCAATTATGACGGGGTACTTGAATAATGAGGAAGCTACAATGTCCACAATTGATAGAGATGATTGGCTACATACTGGAGATGTTGTTTATTTTGATAATGATGGATACTTATACATAGCTGATCGATTGAAAGATATCATCAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTAATTTCGCATCCTGAAATAGTTGATGTTGCTGTTATAGGTGCTACGGATGAAGAAACTGGTGAGATTCCAGTGGCATTTGTGGTAACAAAGGTTGGAAGTGTGCTGTCTCCGAAGCATGTTATGGATTATGCTGCTGAGCAGGTTGCTCCATATAAGAAGATTAGGAAAGTGTTCTTCACCAACAAGATACCAAGGTCTGCGACTGGCAAGATCCTAAGAAAGCAACTGAGGAATTGCTTGACTTCTAAACTATGA 1659 0.4292 MSANVNYGMPLTHPHWFSSKSGIYHSKHAPVDLPSDPFLDAVSFIFSHRHDGVSALVDSSSGCSISYSKLLPLVKSVACGLHKMGVSQGDVVLILLPNSIYYPIVFLGVLYLGAIVTPLNPLSSVHEIRRHVAECGVSLAFTVPENFKKLEPLGISVIAVPENEKGLRHGCFSCFCYLISCDFDLPQRPVIKQDDTAGILYSSGTTGVSKGVVLSHKNLIAMVELFVRFEASQYECSCLRNVYLAVLPMFHVYGLSLFAVGLLSLGSTVVVMRKFDTDEVVRVIDEYKVTHFPVVPPMLTALITRANGVNDCKLQSLIQVSCGAAPLSSGVVDDFLRTFPDVDFIQGYGMTESTAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELWLRGPSIMTGYLNNEEATMSTIDRDDWLHTGDVVYFDNDGYLYIADRLKDIIKYKGFQIAPADLEAVLISHPEIVDVAVIGATDEETGEIPVAFVVTKVGSVLSPKHVMDYAAEQVAPYKKIRKVFFTNKIPRSATGKILRKQLRNCLTSKL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3301g00003 552 Pfam AMP-binding enzyme C-terminal domain 464 538 IPR025110 -
Vium3301g00003 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 449 - -
Vium3301g00003 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 546 - -
Vium3301g00003 552 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Vium3301g00003 552 Pfam AMP-binding enzyme 50 454 IPR000873 -
Vium3301g00003 552 CDD 4CL 33 544 - -
Vium3301g00003 552 Gene3D - 450 550 IPR045851 -
Vium3301g00003 552 FunFam 4-coumarate--CoA ligase 2 450 551 - -
Vium3301g00003 552 SUPERFAMILY Acetyl-CoA synthetase-like 49 548 - -
Vium3301g00003 552 Gene3D - 22 449 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3301g00003 Vium-Chr3301 3344 7892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3301g00003 14 552 Monolignol Biosynthesis Gene Families AT4G19010 60.701 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3301g00003 K01904 - gmx:100804808 973.77