Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium329g00007 ATGGCAACACTAACAAATCAATATTTTCTTCAACACTCTTCAATTCTCATCATTATCAAGATGCCTTCTAATCTCATCGTTTTCTGCACTTTCTTTCTCACCTTATTCTCTTTCAAATCTCAGTCCTTTGCAGATAACCCTTCATGGGTGAAAGCCGGGTATTACTATTCCGGCAATGAAATTTCTGCTTCAGACATCAAAGCCACGCTTTTCACTCACCTTTTATGTGCTTTTGCCTTCATAAACCCCACCACCTACAACATCTTCATCAACTCTTCCGAGGAGCACAAGTTCTCCACCTTCACCAACACGGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGCTGGCAGGGAGGACTCTTTGGCCTTCACCTCAATGCTAAATAGATCTTCTTACAGGAAACTTTTCATTGATTCTTCCATCAGAACAGCGAGGTTCTATGGCTTTCATGGCATAGACCTTACTGGGGCGGGGCCAAGTTCCGAGGTTGCCAATTTTGGAACCCTTTTGAAGGAGTGGCGTGCTGCAATAACTTCCGAGGCAAGAAACTCTACCAAGCCAGAGTTGTTGTTAGTGATGGCAGGTTACTACCTTAAGGCTTCGAACTCCTTGAGTTACCCCTTCGATTCAATGCAGGAGAATTTGGATTGGGTGCATTTTGTGGCTTATGATTACTATCTCCCTAAGGTGGCCAATTCCACGGCTTTTCATGCGGCTTTGTATGGTTCTTCTGATTGGGATAATACTGATTCTGGAATCAGAGAGTGGAGGAGGAGGGGGTTTTCGTCTAAGAAGCTGTTGATTGGATTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCTGCAAACAGTGGCGTGGGAACACCAGCTTCAGGACCTGCCATTACAATGGATGGTTCCATGGGTTACAAGTTCATAAAGAGTTACATCAAAAGCTTTGGAAATGGAGTTGTTTCACGTTACAATGCAAGTTTTGTGGTGAACCAGTTCACCGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAAATCATCAGGGCCAAAGTTTCTTATGCAAGGGAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAATAGGGGCAGCTCAAGCTGTCGATGAAGAATTTGAAGATCATCACAAGATGAGGTTGCTGATAATTGTTCTGCTTGCTACTCTGACTTTGGCCCTTCTGTTGGGAATAGTATTTTGCTACTACAACCCAGGGGCCGTAGCCACTGTTACCAAACTATTGTATAAACTGAGATATTTACCAGAAGCAGAAAAGGATATGGATGCAAACGGCTCTGATTTGACAGTATTCAGCTATCTCACTATTAAAGCGGCAACAAATAACTTCTCAAAAGATAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGAAAATTACGGAAGGGTCAGGAAATAGCAGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAGTTCAAGAATGAAATCACACTCACAGCAAGACTACAGCATGTGAATTTAGTTAGACTTCTGGGATACTGCACAAAAAGGGACGAGAAAATTCTGATCTATGAATACCTGCAAAACAAAAGCTTAGATAATTTCCTCTTTGATCCAACGAAATCAATTCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCCAGTAATGTTTTACTAGATGACAATATGAATCCAAAGATATCCGATTTTGGCATGGCTAGAATTTTCAGAAAATATGACCTTGAAGCAAACACAGAAAGGATAGTTGGAACATATGGGTATGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTACAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAGAGGACTTCATGTTATTATGGCATGGATGAAGATATGACCCTTTTGGAATATGCATATGAACTGTGGAGGGAAGGAAGAGGTGTGGAGTTTGTTGAGCCTTCATTGGATGATAGAGCATCTCCTTGTAAAATCATGAGATGCATGCAGGTAGCTCTACTGTGTGTTCAGGAAAACTCTATGGATAGACCTTCCATGTTGGAAGTTGATTCACTGCTGAAGAATGAAAGTGCAGTTATTGGTACTCCCAAAGTTCCTGCCTTTTCAGTTCAGAAACGTGAAGACGAGAAAGAAACATCTCATACCGGAGACAATTTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA 2367 0.4161 MATLTNQYFLQHSSILIIIKMPSNLIVFCTFFLTLFSFKSQSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTTYNIFINSSEEHKFSTFTNTVKLQNPSVSTLLSIWAGREDSLAFTSMLNRSSYRKLFIDSSIRTARFYGFHGIDLTGAGPSSEVANFGTLLKEWRAAITSEARNSTKPELLLVMAGYYLKASNSLSYPFDSMQENLDWVHFVAYDYYLPKVANSTAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAANSGVGTPASGPAITMDGSMGYKFIKSYIKSFGNGVVSRYNASFVVNQFTVASTTWVNFDDVEIIRAKVSYARENGLLGYNVFQVGNDENWELSIGAAQAVDEEFEDHHKMRLLIIVLLATLTLALLLGIVFCYYNPGAVATVTKLLYKLRYLPEAEKDMDANGSDLTVFSYLTIKAATNNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLQNKSLDNFLFDPTKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDDNMNPKISDFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGMDEDMTLLEYAYELWREGRGVEFVEPSLDDRASPCKIMRCMQVALLCVQENSMDRPSMLEVDSLLKNESAVIGTPKVPAFSVQKREDEKETSHTGDNFYSINDVTISQLAPR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium329g00007 788 FunFam Uncharacterized protein 546 750 - -
Vium329g00007 788 SMART 2g34 49 376 IPR011583 GO:0008061
Vium329g00007 788 Gene3D Glycosidases 64 377 - -
Vium329g00007 788 Gene3D Phosphorylase Kinase; domain 1 444 545 - -
Vium329g00007 788 Pfam Glycosyl hydrolases family 18 54 376 IPR001223 GO:0005975
Vium329g00007 788 Pfam Protein tyrosine and serine/threonine kinase 472 738 IPR001245 GO:0004672|GO:0006468
Vium329g00007 788 SMART serkin_6 470 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium329g00007 788 ProSiteProfiles Protein kinase domain profile. 470 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium329g00007 788 CDD STKc_IRAK 476 743 - -
Vium329g00007 788 FunFam Uncharacterized protein 445 545 - -
Vium329g00007 788 SUPERFAMILY (Trans)glycosidases 52 376 IPR017853 -
Vium329g00007 788 SUPERFAMILY Protein kinase-like (PK-like) 454 757 IPR011009 -
Vium329g00007 788 Gene3D Transferase(Phosphotransferase) domain 1 546 750 - -
Vium329g00007 788 ProSitePatterns Protein kinases ATP-binding region signature. 476 498 IPR017441 GO:0005524
Vium329g00007 788 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 49 392 IPR001223 GO:0005975
Vium329g00007 788 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 388 786 - -
Vium329g00007 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Vium329g00007 788 Gene3D - 277 347 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium329g00007 Vium-Chr329 44078 47381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium329g00007 458 788 Receptor kinase-like Gene Family AT4G11530 51.929 8.40e-115 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium329g00007 Glyco_hydro_18 6.1e-50 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium329g00007 - - aprc:113847882 1220.68