Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium329g00006 ATGGCAACACTAACAAATCAATATTTTCTTCAACACTCTTCAATTCTCATCATTATCAAGATGCCTTCTAATCTCATCGTTTTCTGCACTTTCTTTCTCACCTTATTCTCTTTCAAATCTCAGTCCTTTGCAGATAACCCTTCATGGGTGAAAGCCGGGTATTACTATTCCGGCAATGAAATTTCTGCTTCAGACATCAAAGCCACGCTTTTCACTCACCTTTTATGTGCTTTTGCCTTCATAAACCCCACCACCTACAACATCTTCATCAACTCTTCCGAGGAGCACAAGTTCTCCACCTTCACCAACACGGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGCTGGCAGGGAGGACTCTTTGGCCTTCACCTCAATGCTAAATAGATCTTCTTACAGGAAACTTTTCATTGATTCTTCCATCAGAACAGCGAGGTTCTATGGCTTTCATGGCATAGACCTTACTGGGGCGGGGCCAAGTTCCGAGGTTGCCAATTTTGGAACCCTTTTGAAGGAGTGGCGTGCTGCAATAACTTCCGAGGCAAGAAACTCTACCAAGCCAGAGTTGTTGTTAGTGATGGCAGGTTACTACCTTAAGGCTTCGAACTCCTTGAGTTACCCCTTCGATTCAATGCAGGAGAATTTGGATTGGGTGCATTTTGTGGCTTATGATTACTATCTCCCTAAGGTGGCCAATTCCACGGCTTTTCATGCGGCTTTGTATGGTTCTTCTGATTGGGATAATACTGATTCTGGAATCAGAGAGTGGAGGAGGAGGGGGTTTTCGTCTAAGAAGCTGTTGATTGGATTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCTGCAAACAGTGGCGTGGGAACACCAGCTTCAGGACCTGCCATTACAATGGATGGTTCCATGGGTTACAAGTTCATAAAGAGTTACATCAAAAGCTTTGGAAATGGAGTTGTTTCACGTTACAATGCAAGTTTTGTGGTGAACCAGTTCACCGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAAATCATCAGGGCCAAAGTTTCTTATGCAAGGGAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAATAGGGGCAGCTCAAGCTGTCGATGAAGAATTTGAAGATCATCACAAGATGAGGTTGCTGATAATTGTTCTGCTTGCTACTCTGACTTTGGCCCTTCTGTTGGGAATAGTATTTTGCTACTACAACCCAGGGGCCGTAGCCACTGTTACCAAACTATTGTATAAACTGAGATATTTACCAGAAGCAGAAAAGGATATGGATGCAAACGGCTCTGATTTGACAGTATTCAGCTATCTCACTATTAAAGCGGCAACAAATAACTTCTCAAAAGATAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGAAAATTACGGAAGGGTCAGGAAATAGCAGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAGTTCAAGAATGAAATCACACTCACAGCAAGACTACAGCATGTGAATTTAGTTAGACTTCTGGGATACTGCACAAAAAGGGACGAGAAAATTCTGATCTATGAATACCTGCAAAACAAAAGCTTAGATAATTTCCTCTTTGATCCAACGAAATCAATTCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCCAGTAATGTTTTACTAGATGACAATATGAATCCAAAGATATCCGATTTTGGCATGGCTAGAATTTTCAGAAAATATGACCTTGAAGCAAACACAGAAAGGATAGTTGGAACATATGGGTATGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTACAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAGAGGACTTCATGTTATTATGGCATGGATGAAGATATGACCCTTTTGGAATATGAAGAGGTGTGGAGTTTGTTGAGCCTTCATTGGATGATAGAGCATCTCCTTGTAAAATCATGA 2121 0.4168 MATLTNQYFLQHSSILIIIKMPSNLIVFCTFFLTLFSFKSQSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTTYNIFINSSEEHKFSTFTNTVKLQNPSVSTLLSIWAGREDSLAFTSMLNRSSYRKLFIDSSIRTARFYGFHGIDLTGAGPSSEVANFGTLLKEWRAAITSEARNSTKPELLLVMAGYYLKASNSLSYPFDSMQENLDWVHFVAYDYYLPKVANSTAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAANSGVGTPASGPAITMDGSMGYKFIKSYIKSFGNGVVSRYNASFVVNQFTVASTTWVNFDDVEIIRAKVSYARENGLLGYNVFQVGNDENWELSIGAAQAVDEEFEDHHKMRLLIIVLLATLTLALLLGIVFCYYNPGAVATVTKLLYKLRYLPEAEKDMDANGSDLTVFSYLTIKAATNNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLQNKSLDNFLFDPTKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDDNMNPKISDFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGMDEDMTLLEYEEVWSLLSLHWMIEHLLVKS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium329g00006 706 SUPERFAMILY Protein kinase-like (PK-like) 454 686 IPR011009 -
Vium329g00006 706 SMART 2g34 49 376 IPR011583 GO:0008061
Vium329g00006 706 Pfam Protein kinase domain 471 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium329g00006 706 FunFam Uncharacterized protein 445 545 - -
Vium329g00006 706 Gene3D Phosphorylase Kinase; domain 1 444 545 - -
Vium329g00006 706 Gene3D Transferase(Phosphotransferase) domain 1 546 702 - -
Vium329g00006 706 SMART serkin_6 470 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium329g00006 706 SUPERFAMILY (Trans)glycosidases 52 376 IPR017853 -
Vium329g00006 706 ProSitePatterns Protein kinases ATP-binding region signature. 476 498 IPR017441 GO:0005524
Vium329g00006 706 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 388 692 - -
Vium329g00006 706 Gene3D - 277 347 IPR029070 -
Vium329g00006 706 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 546 637 - -
Vium329g00006 706 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 49 392 IPR001223 GO:0005975
Vium329g00006 706 Pfam Glycosyl hydrolases family 18 54 376 IPR001223 GO:0005975
Vium329g00006 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Vium329g00006 706 Gene3D Glycosidases 64 377 - -
Vium329g00006 706 ProSiteProfiles Protein kinase domain profile. 470 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium329g00006 Vium-Chr329 44072 47251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium329g00006 24 390 Glycoside Hydrolase AT4G19810 45.676 1.12e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium329g00006 Glyco_hydro_18 4.8e-50 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium329g00006 - - aprc:113847882 1060.06