Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium329g00001 ATGGTGGAAGAAGACCATTTTCCTGTGGGTTTGCGTGTACTTGCGGTTGATGACGACCGAACTTATCTCACAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATAATGTTACTGCAACTACTCAATCAGTGAAGGCTCTAGAAATGCTGAGGAAAAACAGAAACGAGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGAAATGGATGGGTTTAAGCTGCTTCAGCAAGTGGGACTTGAGACGGACCTACCCGTTATCATGTTGTCAGGGTACGGTGATAAAGAACGGGTGATGAAAGGTGTCATATATGGTGCTTGTGACTTTTTAACCAAACCAGTTCGAATTCAAGAGTTACAGAACATATGGCAACATGTAGTGCGGAGGAAGATTGACAGCAAGGATAAGAATAAGACTGCAAGTGAGGAAAAAGACTGCAGTATGGCATGCAAGTTTGCAAATGAGGAGGAACCATGCACTGTTGCTGGGGAATGTAGTCAAGCCTTTGCACCAAAAACTAATGCTAACCAGAATATAAAAGTGGATCATAAAAGGAAAGAACGCTGTGAGGCTGAGGAAATAGAAGAAGATGACAAAGAGAACGATGAACCCTCCAATCAGAAGAAAACTCGTTTAGTTTGGGATACTGAGTTGCATAACAAATTTCTTGCTGCCATTAATCAGCTGGGAATTGACAAGGCTTTCCCCAAGAAAATACTTGACTTGATGAATATTGATGGACTTTCAAGAGAAAACGTAGCAAGCCATCTCCAGAAATTCAGACTCGGTCTCAAAAAGCCCAATCCTTACCACCGTATGGGTTCAGTTGATTGCTTTCGCACTTCATCTGAATCAGGAGCTATGTTGAGCACCACATCACCTTCATATGCATATGCACCTGGTGGAAGGTTTTGTGTGTTAAACTCTCCATCCTGCTTGAACACGAGAGGAATGAACTCATCTGCAATTGTTCAGGCTTCTCAGTCTCGAAACATTAACAGCAGTTCCATAAAAACATATGGAAACATGCACTCGTCTATGTTTTCTGCAAATCAAACCTCAAGCTTATTGCAAGGCTTTCCAACATCAATGGAGGCTAACCTGTTTAAGCCGAACAACTCAGCAGCTGGTATTAGGAGGTTTAATATTAATCCACTTGATCACTCAGCTGCACTTAAAGATTTCTCTAGTTTCTCGGAAAATATAGCTACTGTTAGAAATGCAGCTAATATATCTCTTCCTGGTCTCTCCAATAATCATTTACTTTTTCAAGGAATTTCCCAACTTTAA 1290 0.4116 MVEEDHFPVGLRVLAVDDDRTYLTVLENLLRKCQYNVTATTQSVKALEMLRKNRNEFDLVISDVNMPEMDGFKLLQQVGLETDLPVIMLSGYGDKERVMKGVIYGACDFLTKPVRIQELQNIWQHVVRRKIDSKDKNKTASEEKDCSMACKFANEEEPCTVAGECSQAFAPKTNANQNIKVDHKRKERCEAEEIEEDDKENDEPSNQKKTRLVWDTELHNKFLAAINQLGIDKAFPKKILDLMNIDGLSRENVASHLQKFRLGLKKPNPYHRMGSVDCFRTSSESGAMLSTTSPSYAYAPGGRFCVLNSPSCLNTRGMNSSAIVQASQSRNINSSSIKTYGNMHSSMFSANQTSSLLQGFPTSMEANLFKPNNSAAGIRRFNINPLDHSAALKDFSSFSENIATVRNAANISLPGLSNNHLLFQGISQL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium329g00001 429 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Vium329g00001 429 Gene3D - 11 147 - -
Vium329g00001 429 SMART REC_2 11 123 IPR001789 GO:0000160
Vium329g00001 429 PIRSF RR_ARR_type-B 1 428 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vium329g00001 429 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Vium329g00001 429 SUPERFAMILY CheY-like 10 133 IPR011006 -
Vium329g00001 429 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Vium329g00001 429 Gene3D - 205 266 - -
Vium329g00001 429 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Vium329g00001 429 FunFam Two-component response regulator 205 267 - -
Vium329g00001 429 CDD REC_typeB_ARR-like 13 127 - -
Vium329g00001 429 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 328 IPR045279 GO:0009736
Vium329g00001 429 Pfam Myb-like DNA-binding domain 213 259 IPR001005 -
Vium329g00001 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium329g00001 Vium-Chr329 2179 5038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium329g00001 5 428 Response Regulator Gene Family AT2G25180 41.723 4.34e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium329g00001 Response_reg 7.4e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium329g00001 - K14491 vum:124834863 835.099