Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3295g00003 ATGCAGATCTGTGAATTGGTTTTCAATTGGAAACTGGCGGGGCTTGGATATCATCGAAATGCAAAGAAATGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAAAACAAAAGTGGGAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAATCATCAGTTCACGATCTCTTACCCAACAAAGCCACAACCTACTTTGGCAACAACAAACACATTGACGTTGCCAGCTAGACAAAGTGATCATGGTAACAACAACGTTATCTCTTATGTCACACCTTTTCCTTCCACAAACCCTACACACATTTCTCCTTCACCACAAACCAATACCGACACCAACACAAACACCACCACAGTATCCACAACCAACCCTAGAGACACATCACCACCACAAACCACCACCACCACCGCCAACAACACCAACAACGACAATGTCACGTATTCTTTGCCAAACATGAACACCCCTTTCTCAACCACCACCACCACCTCCACCTCTTCTTCCACAGCATCTGATGAAGACTTGGAAGAGAGGTACCGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTCTTGAAGCAAGAGGAAATGCAGAAGAAGTTCTTGGAAGCCATGGACAAAAGGGAGAGGGAAAGAGTGGCACAACAAGACAATTGGAGGATCCAAGAAATGGCAAGGATTAACAGGGAACACGAGATTCTTGTTCAGGAGAGATCAACAGCAGCAGCCAAAGATGCTGCAGTCATTGCATTATTGCAGAAGATGTACGGCCAGCAAAACACCACACAACATGTTCAAGTACAGCCACCAGAACAACAGAATCAAACAACGCTACAATCACAGCTTCCAACACCAATGCCAAACAATAACTTTGAGATCAAGAAATTGAATAATGGTCATCACAGTGCCACCAGTACTAGCACTGTCACTACTTCTCCCGCGACTTCTTCTTCTTCTAGATGGCCAAAGGCTGAAGTTCATGCTTTGATAAGGTTGAGGACAAGTCTGGACACCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCGATCGCAATGCAGAGGCTTGGTTACAACCGGAGTGCAAAGAGATGCAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAAAAAAATGAGGGACAATAACAAAGAAAGGCGTGAAAATAGCAAAACATGTCCTTATTTTCACGAGCTTGATGCTATATACAAGGAAAGGAGCTTATCCCAGAACCCCTTTGGCGTGTTCCAGAACATGAAGCCGAACGAGATGATGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGGCCTCCACCTCAATCGTTGGAAGAGGGTATAGAGAAGAACTCTAGCGATGAATATCAAGAAAAAGAAGAAGAAAACGAAGGTGATGATGATGATCACGTTGGTGTTGAAGAAGATGAAGATGGTGTGGAAGATGAAGCGTGTGAGACTGGGACAAATGATTAA 1536 0.4382 MQICELVFNWKLAGLGYHRNAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENHQFTISYPTKPQPTLATTNTLTLPARQSDHGNNNVISYVTPFPSTNPTHISPSPQTNTDTNTNTTTVSTTNPRDTSPPQTTTTTANNTNNDNVTYSLPNMNTPFSTTTTTSTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDKRERERVAQQDNWRIQEMARINREHEILVQERSTAAAKDAAVIALLQKMYGQQNTTQHVQVQPPEQQNQTTLQSQLPTPMPNNNFEIKKLNNGHHSATSTSTVTTSPATSSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRDNNKERRENSKTCPYFHELDAIYKERSLSQNPFGVFQNMKPNEMMMMEPLMVQPEQQWRPPPQSLEEGIEKNSSDEYQEKEEENEGDDDDHVGVEEDEDGVEDEACETGTND 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3295g00003 511 FunFam Trihelix transcription factor GT-2 336 397 - -
Vium3295g00003 511 ProSiteProfiles Myb-like domain profile. 334 392 IPR001005 -
Vium3295g00003 511 PANTHER FI21293P1 11 479 - -
Vium3295g00003 511 MobiDBLite consensus disorder prediction 453 511 - -
Vium3295g00003 511 MobiDBLite consensus disorder prediction 104 179 - -
Vium3295g00003 511 MobiDBLite consensus disorder prediction 478 505 - -
Vium3295g00003 511 CDD GT1 335 399 - -
Vium3295g00003 511 Pfam Myb/SANT-like DNA-binding domain 334 421 IPR044822 -
Vium3295g00003 511 Gene3D - 2 37 - -
Vium3295g00003 511 Gene3D - 336 397 - -
Vium3295g00003 511 MobiDBLite consensus disorder prediction 277 335 - -
Vium3295g00003 511 MobiDBLite consensus disorder prediction 104 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3295g00003 Vium-Chr3295 53835 56194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3295g00003 11 457 Trihelix Transcription Factor Family AT1G76880 46.170 1.75e-106 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3295g00003 Myb_DNA-bind_4 2.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3295g00003 - - gmx:100807507 703.36