Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3295g00002 ATGCAGCTAGGAGACTCAAGTGTGTTGGAGATCTCCTCCCATAGCGAGCCCGAGATGGCGGTGGCGGCGGCGGCGGAAGGAGCGGCTCACGGCGGCGAGGATGACGGTGGTGATGATGAGATGATTGGAGTGGATGTGGATGGAAATTCAGGTGAAGGAAATGAAGGTAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCAGTGTTTCGTGATTCAAGTCTTAAAGGTCCACTATGGGAAGAAGTTTCAAGGAAACTGGCGGGGCTTGGATATCATCGAAATGCAAAGAAATGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAAAACAAAAGTGGGAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAATCATCAGTTCACGATCTCTTACCCAACAAAGCCACAACCTACTTTGGCAACAACAAACACATTGACGTTGCCAGCTAGACAAAGTGATCATGGTAACAACAACGTTATCTCTTATGTCACACCTTTTCCTTCCACAAACCCTACACACATTTCTCCTTCACCACAAACCAATACCGACACCAACACAAACACCACCACAGTATCCACAACCAACCCTAGAGACACATCACCACCACAAACCACCACCACCACCGCCAACAACACCAACAACGACAATGTCACGTATTCTTTGCCAAACATGAACACCCCTTTCTCAACCACCACCACCACCTCCACCTCTTCTTCCACAGCATCTGATGAAGACTTGGAAGAGAGGTACCGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTCTTGAAGCAAGAGGAAATGCAGAAGAAGTTCTTGGAAGCCATGGACAAAAGGGAGAGGGAAAGAGTGGCACAACAAGACAATTGGAGGATCCAAGAAATGGCAAGGATTAACAGGGAACACGAGATTCTTGTTCAGGAGAGATCAACAGCAGCAGCCAAAGATGCTGCAGTCATTGCATTATTGCAGAAGATGTACGGCCAGCAAAACACCACACAACATGTTCAAGTACAGCCACCAGAACAACAGAATCAAACAACGCTACAATCACAGCTTCCAACACCAATGCCAAACAATAACTTTGAGATCAAGAAATTGAATAATGGTCATCACAGTGCCACCAGTACTAGCACTGTCACTACTTCTCCCGCGACTTCTTCTTCTTCTAGATGGCCAAAGGCTGAAGTTCATGCTTTGATAAGGTTGAGGACAAGTCTGGACACCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCGATCGCAATGCAGAGGCTTGGTTACAACCGGAGTGCAAAGAGATGCAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAAAAAAATGAGGGACAATAACAAAGAAAGGCGTGAAAATAGCAAAACATGTCCTTATTTTCACGAGCTTGATGCTATATACAAGGAAAGGAGCTTATCCCAGAACCCCTTTGGCGTGTTCCAGAACATGAAGCCGAACGAGATGATGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGGCCTCCACCTCAATCGTTGGAAGAGGGTATAGAGAAGAACTCTAGCGATGAATATCAAGAAAAAGAAGAAGAAAACGAAGGTGATGATGATGATCACGTTGGTGTTGAAGAAGATGAAGATGGTGTGGAAGATGAAGCGTGTGAGACTGGGACAAATGATTAA 1806 0.454 MQLGDSSVLEISSHSEPEMAVAAAAEGAAHGGEDDGGDDEMIGVDVDGNSGEGNEGNKMSFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYHRNAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENHQFTISYPTKPQPTLATTNTLTLPARQSDHGNNNVISYVTPFPSTNPTHISPSPQTNTDTNTNTTTVSTTNPRDTSPPQTTTTTANNTNNDNVTYSLPNMNTPFSTTTTTSTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDKRERERVAQQDNWRIQEMARINREHEILVQERSTAAAKDAAVIALLQKMYGQQNTTQHVQVQPPEQQNQTTLQSQLPTPMPNNNFEIKKLNNGHHSATSTSTVTTSPATSSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRDNNKERRENSKTCPYFHELDAIYKERSLSQNPFGVFQNMKPNEMMMMEPLMVQPEQQWRPPPQSLEEGIEKNSSDEYQEKEEENEGDDDDHVGVEEDEDGVEDEACETGTND 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3295g00002 601 Pfam Myb/SANT-like DNA-binding domain 424 511 IPR044822 -
Vium3295g00002 601 Pfam Myb/SANT-like DNA-binding domain 64 150 IPR044822 -
Vium3295g00002 601 PANTHER FI21293P1 26 569 - -
Vium3295g00002 601 CDD GT1 425 489 - -
Vium3295g00002 601 CDD GT1 64 129 - -
Vium3295g00002 601 MobiDBLite consensus disorder prediction 1 64 - -
Vium3295g00002 601 MobiDBLite consensus disorder prediction 568 595 - -
Vium3295g00002 601 Gene3D - 426 487 - -
Vium3295g00002 601 Gene3D - 66 127 - -
Vium3295g00002 601 SMART sant 422 484 IPR001005 -
Vium3295g00002 601 SMART sant 62 124 IPR001005 -
Vium3295g00002 601 MobiDBLite consensus disorder prediction 543 601 - -
Vium3295g00002 601 MobiDBLite consensus disorder prediction 193 269 - -
Vium3295g00002 601 FunFam Trihelix transcription factor GT-2 66 127 - -
Vium3295g00002 601 MobiDBLite consensus disorder prediction 193 277 - -
Vium3295g00002 601 ProSiteProfiles Myb-like domain profile. 424 482 IPR001005 -
Vium3295g00002 601 MobiDBLite consensus disorder prediction 368 425 - -
Vium3295g00002 601 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Vium3295g00002 601 FunFam Trihelix transcription factor GT-2 426 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3295g00002 Vium-Chr3295 53356 56194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3295g00002 61 547 Trihelix Transcription Factor Family AT1G76880 49.331 1.44e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3295g00002 Myb_DNA-bind_4 3.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3295g00002 - - gmx:100807507 845.499