Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium328g00011 ATGGCAGATGTAACCACCTACCCCCGCCACCACCGCCACTCCCGCCACCCCGACGATGACCAAACTCTGATCCCTTTCCCTTATTGGGACTTAGATTTTGATTTTGATCCCGAATTCCACCCCAACCGTTTCTCCCTCACCGACCGCGAGAACCAGGTCAATTTCGTAATGGATCTCTTTCACCAGCGCGTTGAACAATCGCAACTCACCGATCCCCTCTCTAACGACGCCTTTTTCGGCGTTATCGACGCCCTAGACGCCATCGACCTTGGCTTCCCCGCCGCCGACGACTTACTTGTCGGAGGTCGGCTCTCCGTCGGATCTGACTCCGACGAATCGCTCTACCAGTCTGGAAACATCGACAGCGTGCTCGGGATCTGCACGCACTCGGAGGAAGAGTACAACGTGAACGACGACGTTTCGAACATCCCTCTCTGCTTGGACGCGCTTCAATTGGAAGACAACAGAGACAGTTATGATGATTTCGAGTGGGAGGAAGTGGTCGACGAGAGAGAAGTTCTGAGCATGTTCGACGACACCTCCGTTTCCGTCTCCTTTGGAATCGAAGAGGAGGCGGAGGAGGAAGTAGAATTTGAAATGGAGACCAACAATTTGGGGTGGCAGGTTCTGTTGAACGCCAATTTGGAGGGAACGAATTCCGAGCCTTATTTCGGAGACAACGAGGACTTCGTGTACGCCGCGGAGTACGAGATGTTCAGCCAATTCAACGACGTCGCCTTCGTCGGGAAGCCTCCGGCGTCCGTCTCCGCCGTGAGGAAACTGTCGGCGGTGGTCGTGAGCGCTGCTGACGTGGCAAACGGAAACGTGGTTTGCGCGGTCTGTAAGGAGGAGTTTGGGGTTGGGGAAGAGGTGAAGCAGTTGCCGTGTTCGCATCGTTATCACGGGGACTGCATTGTGCCGTGGTTGGGGATAAGGAACACGTGTCCCGTTTGTCGCTTTGAGTTTCCCACTGATGATGCTGATTATGAGCAGAGGAAGGCACATACATCTGTTATGTGA 1020 0.5451 MADVTTYPRHHRHSRHPDDDQTLIPFPYWDLDFDFDPEFHPNRFSLTDRENQVNFVMDLFHQRVEQSQLTDPLSNDAFFGVIDALDAIDLGFPAADDLLVGGRLSVGSDSDESLYQSGNIDSVLGICTHSEEEYNVNDDVSNIPLCLDALQLEDNRDSYDDFEWEEVVDEREVLSMFDDTSVSVSFGIEEEAEEEVEFEMETNNLGWQVLLNANLEGTNSEPYFGDNEDFVYAAEYEMFSQFNDVAFVGKPPASVSAVRKLSAVVVSAADVANGNVVCAVCKEEFGVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRFEFPTDDADYEQRKAHTSVM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium328g00011 339 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Vium328g00011 339 PANTHER SI:CH211-59O9.10 42 324 - -
Vium328g00011 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 325 IPR013083 -
Vium328g00011 339 CDD RING-H2_RNF126-like 278 319 - -
Vium328g00011 339 FunFam E3 ubiquitin-protein ligase RING1-like 239 325 - -
Vium328g00011 339 SMART ring_2 278 318 IPR001841 -
Vium328g00011 339 SUPERFAMILY RING/U-box 272 325 - -
Vium328g00011 339 Pfam Ring finger domain 278 319 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium328g00011 Vium-Chr328 70442 71842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium328g00011 224 334 C3H Transcription Factor Family AT3G02340 50.000 1.84e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium328g00011 - - gmx:100794303 462.611