Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium328g00008 ATGGAATGCAATGAAGATGATGAACTCCATGTAGCCCCTTATGCTTCCTTAACACAGTGCTTTCACTATCCTTCTCCAACCCAGAAACCTATCCCGACCTCAACAATGGAAACTGGTGAAGGCCATAATTTGACCCATCTGGACCAACCTCATAGTTTACACCACTTTCCATTTTTCTGCTCCCAATTGCACCTTCCAAGCAACAACCACGACCCAATTAAAATCCCACTCCATAAACCCTCTCCCAACACATCATCAAACAGTAACAACAATAACAATTCTGATGAAGCAAAGGCTCTCCTTGATGACAGAAAGAAGAAAAGGATGTTCTCCAACAGAGAATCTGCTCGCAGGTCTCGCATGCGAAAGAAACAACAGATTGAAGTCCTGCAGTATCACGTGGATCATCTGCAGACACTAAACCATCAACTCTCCCAAAAGATCATTTACTTGCTTGAATGTAACCAACAAATCCACCAACAGAATTCTCAGCTAAAAGAAAAAGTTTCCTCTCTTCAGGTAGTACTCTCTGACTTGTTGGTTCCTGCAGCCGGTGCAGAACAACCTCACCACATCCCTAATGGCTTCCTAGCCGAGCCTTCTTCAACTAGACCAATTTCAAGTTCCCGAACATAG 636 0.4371 MECNEDDELHVAPYASLTQCFHYPSPTQKPIPTSTMETGEGHNLTHLDQPHSLHHFPFFCSQLHLPSNNHDPIKIPLHKPSPNTSSNSNNNNNSDEAKALLDDRKKKRMFSNRESARRSRMRKKQQIEVLQYHVDHLQTLNHQLSQKIIYLLECNQQIHQQNSQLKEKVSSLQVVLSDLLVPAAGAEQPHHIPNGFLAEPSSTRPISSSRT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium328g00008 211 SMART brlzneu 100 164 IPR004827 GO:0003700|GO:0006355
Vium328g00008 211 CDD bZIP_plant_GBF1 105 153 IPR045314 GO:0003700|GO:0006355
Vium328g00008 211 Gene3D - 103 177 - -
Vium328g00008 211 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 102 165 IPR004827 GO:0003700|GO:0006355
Vium328g00008 211 SUPERFAMILY Leucine zipper domain 104 160 IPR046347 GO:0003700|GO:0006355
Vium328g00008 211 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 34 187 IPR044521 -
Vium328g00008 211 MobiDBLite consensus disorder prediction 79 96 - -
Vium328g00008 211 MobiDBLite consensus disorder prediction 192 211 - -
Vium328g00008 211 FunFam BZIP transcription factor 102 153 - -
Vium328g00008 211 MobiDBLite consensus disorder prediction 97 122 - -
Vium328g00008 211 MobiDBLite consensus disorder prediction 71 122 - -
Vium328g00008 211 Pfam bZIP transcription factor 103 162 IPR004827 GO:0003700|GO:0006355
Vium328g00008 211 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 107 122 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium328g00008 Vium-Chr328 66827 70434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium328g00008 102 208 bZIP Transcription Factor Family AT5G60830 54.630 5.83e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium328g00008 bZIP_1 1.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium328g00008 - - gmx:102664001 321.242