Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium328g00003 ATGGGGTGCTCATTCTCTGGTTTGAACGCGCTGTACGATTCCGTTAACAGCGGAGGCGATGCGTGGATCAACGAGAATCGTTTCCGCATCGTGCGCCAGCTCGGAGAAGGTGGCTTCGCCTACGTCTACCTCGTCAAGGAGCTTATCAACGACTCCGCCGCCGGTGGCCTTGCCAAGAAGCTCAAAGACTCCTCTCATCTCTCCGAGGATGGGACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTCTCGTCACTGTTCAATCATCCCAATCTGCTCCCACTTCTTGATCATGCAATTATTTCTGTTAAGCCTACCCAAGAAACGTCTTGGAACCATGAAGCGTACTTGCTGTTTCCAGTTCATATGGATGGAACATTGCTAGACAATGCCAAAGTAATGAAAACCAAGAAGGAATTCTATTCCACCTCAGATGTTCTTCAAATATTTCGTCAGCTTTGTGCAGGACTCAAGCACATGCACAGCTTTGATCCTCCTTATGCACATAATGATGTGAAACCTGGTAATGTTCTCATAACACACAGAAAAGGACAGCCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAAGCAAATTACGAACAGATCAGAAGCACTCCAGTTACAGGAATGGGCAGCTGAACACTGCTCTGCACCTTTCCGAGCTCCTGAGCTGTGGGATTGTCCAAGCCAAGCTTCTATAGATGAGAGGACTGACGTTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTGGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATAGTAAATGCTCAGGTGAAATGGCCAGCTGGACCTAAGCCTCCATATCCAGAAGCTTTTCACCAGTTCGTGTCATGGATGCTTCAGCCCCAGGCTGCTATGAGGCCCCGAATAGATGATATCATCATCCATGTGGATAAGTTGATTGCAAAGTTCACCCAATGA 1029 0.4752 MGCSFSGLNALYDSVNSGGDAWINENRFRIVRQLGEGGFAYVYLVKELINDSAAGGLAKKLKDSSHLSEDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQETSWNHEAYLLFPVHMDGTLLDNAKVMKTKKEFYSTSDVLQIFRQLCAGLKHMHSFDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQITNRSEALQLQEWAAEHCSAPFRAPELWDCPSQASIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEAFHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFTQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium328g00003 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 340 - -
Vium328g00003 342 Pfam Protein kinase domain 66 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium328g00003 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vium328g00003 342 CDD STKc_16 27 338 - -
Vium328g00003 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium328g00003 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium328g00003 342 ProSitePatterns Protein kinases ATP-binding region signature. 34 60 IPR017441 GO:0005524
Vium328g00003 342 SUPERFAMILY Protein kinase-like (PK-like) 18 332 IPR011009 -
Vium328g00003 342 Gene3D Transferase(Phosphotransferase) domain 1 15 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium328g00003 Vium-Chr328 10230 17592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium328g00003 33 332 EF-hand Containing Proteins AT4G04710 24.918 6.53e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vium328g00003 Pkinase 2.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium328g00003 K08856 - gmx:100803659 665.225